Biography
Ami's group identifies problems and questions that arise in the course of routine clinical care. Often in collaboration with investigators at Stanford and beyond, the group applies modern genetic, molecular and computational techniques to seek answers to these questions, better understand host-microbe interactions and decipher how perturbation of these interactions may result in human disease phenotypes.
Professional Summary
Education & Certifications
- Board Certification: American Board of Internal Medicine, Medical Oncology (2015)
- Fellowship: Brigham and Women's Hospital Harvard Medical School (2014) MA
- Residency: Brigham and Women's Hospital Harvard Medical School (2011) MA
- Board Certification: American Board of Internal Medicine, Internal Medicine (2010)
- Medical Education: University of California - San Francisco (2007) CA
- Post-doctoral Fellowship, Broad Institute of Harvard and MIT (2014)
- Hematology/Oncology Fellowship, Dana-Farber Cancer Institute, Harvard Medical School (2014)
- Chief Residency, Brigham and Women's Hospital, Harvard Medical School (2011)
- Residency, Brigham and Women's Hospital, Harvard Medical School (2009)
- MD, University of California, San Francisco, Medicine (2007)
- PhD, University of California, San Francisco, Biochemistry and Molecular Biology (2005)
Honors & Awards
- AACR Clinical and Translational Fellowship, AACR (2012)
- Alpha Omega Alpha, UCSF (2007)
- Amy Strelzer Manasevit Scholar, National Marrow Donor Program (2013)
- ASCO Young Investigator Award, ASCO (2013)
- ASH Scholar Award, American Society of Hematology (2013)
- Barr Innovative Basic Science Research Award, Dana-Farber Cancer Institute (2013)
- Baxter Foundation Fellow, Baxter Foundation (2018)
- Career Development Award (Fellow), Leukemia and Lymphoma Society (2013)
- Chancellor's Fellowship, UCSF (2004)
- Chen Award of Excellence, Human Genome Organisation (HUGO) (2018)
- Damon Runyon Clinical Investigator Award, Damon Runyon Foundation (2016)
- Elected Member, American Society for Clinical Investigation (ASCI) (2021)
- Emerging Leader in Health and Medicine, National Academy of Medicine (2020)
- Hall/Sewankambo Mid-Career Global Health Award, Consortiums of Universities for Global Health (2017)
- McCormick and Gabilan Fellowship, Stanford University (2016)
- Richard Fineberg Award for Excellence in Teaching, UCSF (2002)
- Rosenkranz Prize for Healthcare Research in Developing Countries, Stanford University (2016)
- Sloan Foundation Fellow, Sloan Foundation (2020)
- V Scholar, V Foundation (2018)
- World Cancer Young Leader Award, Union for International Cancer Control (2016)
Memberships
- Editorial Board Member, Journal of Global Oncology, ASCO (2015 - 2021)
- Editorial Board Member, Blood (2018 - Present)
- Editorial Board Member, Seminars in Hematology (2016 - Present)
- Editorial Board Member, The Oncologist (2013 - 2018)
Administrative Appointments
- Director of Global Oncology, Center for Innovation in Global Health (2014 - Present)
Publications
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Comprehensive molecular characterization of urothelial bladder carcinoma
Weinstein, J. N., Akbani, R., Broom, B. M., Wang, W., Verhaak, R. G. W., McConkey, D., … Eley, G. (2014). Comprehensive molecular characterization of urothelial bladder carcinoma. NATURE, 507(7492), 315–22. -
Quantitation of membrane type serine protease 1 (MT-SP1) in transformed and normal cells
Bhatt, A. S., Takeuchi, T., Ylstra, B., Ginzinger, D., Albertson, D., Shuman, M. A., & CRAIK, C. S. (2003). Quantitation of membrane type serine protease 1 (MT-SP1) in transformed and normal cells. BIOLOGICAL CHEMISTRY, 384(2), 257–266. -
Substrates of the prostate-specific serine protease prostase/KLK4 defined by positional-scanning peptide libraries
Matsumura, M., Bhatt, A. S., Andress, D., Clegg, N., Takayama, T. K., CRAIK, C. S., & Nelson, P. S. (2005). Substrates of the prostate-specific serine protease prostase/KLK4 defined by positional-scanning peptide libraries. PROSTATE, 62(1), 1–13. -
Hepatocyte growth factor is a preferred in vitro substrate for human hepsin, a membrane-anchored serine protease implicated in prostate and ovarian cancers
Herter, S., Piper, D. E., Aaron, W., Gabriele, T., Cutler, G., Cao, P., … Austin, R. J. (2005). Hepatocyte growth factor is a preferred in vitro substrate for human hepsin, a membrane-anchored serine protease implicated in prostate and ovarian cancers. BIOCHEMICAL JOURNAL, 390, 125–136. -
Adhesion signaling by a novel mitotic substrate of src kinases
Bhatt, A. S., Erdjument-Bromage, H., Tempst, P., CRAIK, C. S., & Moasser, M. M. (2005). Adhesion signaling by a novel mitotic substrate of src kinases. ONCOGENE, 24(34), 5333–5343. -
Coordinate expression and functional profiling identify an extracellular proteolytic signaling pathway
Bhatt, A. S., Welm, A., Farady, C. J., Vasquez, M., Wilson, K., & Craik, C. S. (2007). Coordinate expression and functional profiling identify an extracellular proteolytic signaling pathway. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 104(14), 5771–76. -
MT-SP1 proteolysis and regulation of cell-microenvironment interactions
Darragh, M. R., Bhatt, A. S., & Craik, C. S. (2008). MT-SP1 proteolysis and regulation of cell-microenvironment interactions. FRONTIERS IN BIOSCIENCE-LANDMARK, 13, 528–539. -
NK-Cell and B-Cell Deficiency with a Thymic Mass
Ng, S., Fanta, C., Okam, M., & Bhatt, A. S. (2011). NK-Cell and B-Cell Deficiency with a Thymic Mass. NEW ENGLAND JOURNAL OF MEDICINE, 364(6), 586–88. -
Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome
Bhatt, A. S., Freeman, S. S., Herrera, A. F., Pedamallu, C. S., Gevers, D., Duke, F., … Meyerson, M. (2013). Sequence-Based Discovery of Bradyrhizobium enterica in Cord Colitis Syndrome. NEW ENGLAND JOURNAL OF MEDICINE, 369(6), 517–28. -
In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing-Based Characterization of the Giant Cell Arteritis Microbiome
Bhatt, A. S., Manzo, V. E., Pedamallu, C. S., Duke, F., Cai, D., Bienfang, D. C., … Docken, W. P. (2014). In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing-Based Characterization of the Giant Cell Arteritis Microbiome. ARTHRITIS & RHEUMATOLOGY, 66(7), 1939–44. -
The human microbiome in hematopoiesis and hematologic disorders.
Manzo, V. E., & Bhatt, A. S. (2015). The human microbiome in hematopoiesis and hematologic disorders. Blood, 126(3), 311–18. -
DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors
Bambury, R. M., Bhatt, A. S., Riester, M., Pedamallu, C. S., Duke, F., Bellmunt, J., … Rosenberg, J. E. (2015). DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors. BMC CANCER, 15. -
Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma
Perry, J. A., Kiezun, A., Tonzi, P., Van Allen, E. M., Carter, S. L., Baca, S. C., … Janeway, K. A. (2014). Complementary genomic approaches highlight the PI3K/mTOR pathway as a common vulnerability in osteosarcoma. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 111(51), E5564–E5573. -
Epidemiologic Investigation of a Cluster of Neuroinvasive Bacillus cereus Infections in 5 Patients With Acute Myelogenous Leukemia.
Rhee, C., Klompas, M., Tamburini, F. B., Fremin, B. J., Chea, N., Epstein, L., … Yokoe, D. S. (2015). Epidemiologic Investigation of a Cluster of Neuroinvasive Bacillus cereus Infections in 5 Patients With Acute Myelogenous Leukemia. Open Forum Infectious Diseases, 2(3), ofv096-? -
Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation
Andermann, T. M., Rezvani, A., & Bhatt, A. S. (2016). Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation. CURRENT HEMATOLOGIC MALIGNANCY REPORTS, 11(1), 19–28. -
Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice
Shono, Y., Docampo, M. D., Peled, J. U., Perobelli, S. M., Velardi, E., Tsai, J. J., … Jenq, R. R. (2016). Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice. SCIENCE TRANSLATIONAL MEDICINE, 8(339). -
Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the ?-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case.
Knoechel, B., Bhatt, A., Pan, L., Pedamallu, C. S., Severson, E., Gutierrez, A., … Aster, J. C. (2015). Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the ?-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case. Cold Spring Harbor Molecular Case Studies, 1(1). -
Infection Rates among Acute Leukemia Patients Receiving Alternative Donor Hematopoietic Cell Transplantation.
Ballen, K., Woo Ahn, K., Chen, M., Abdel-Azim, H., Ahmed, I., Aljurf, M., … Riches, M. L. (2016). Infection Rates among Acute Leukemia Patients Receiving Alternative Donor Hematopoietic Cell Transplantation. Biology of Blood and Marrow Transplantation , 22(9), 1636–45. -
The Burden of Cancer in Asian Americans: A Report of National Mortality Trends by Asian Ethnicity
Thompson, C. A., Gomez, S. L., Hastings, K. G., Kapphahn, K., Yu, P., Shariff-Marco, S., … Palaniappan, L. P. (2016). The Burden of Cancer in Asian Americans: A Report of National Mortality Trends by Asian Ethnicity. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION, 25(10), 1371–82. -
Antibiotics in Hematopoietic Cell Transplantation: Adversaries or Allies?
Andermann, T. M., & Bhatt, A. S. (2016). Antibiotics in Hematopoietic Cell Transplantation: Adversaries or Allies? BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION, 22(6), 972–74. -
Microbes prevent HSPCs from "NOD"-ing off.
Bhatt, A. S. (2017). Microbes prevent HSPCs from "NOD"-ing off. Blood, 129(2), 139–40. -
Quantitative Computed Tomography Assessment of Bronchiolitis Obliterans Syndrome after Lung Transplantation.
Gazourian, L., Ash, S., Meserve, E. E. K., Diaz, A., Estepar, R. S. J., El-Chemaly, S. Y., … Washko, G. R. (2017). Quantitative Computed Tomography Assessment of Bronchiolitis Obliterans Syndrome after Lung Transplantation. Clinical Transplantation. -
Antibiotic-mediated modification of the intestinal microbiome in allogeneic hematopoietic stem cell transplantation
Whangbo, J., Ritz, J., & Bhatt, A. (2017). Antibiotic-mediated modification of the intestinal microbiome in allogeneic hematopoietic stem cell transplantation. BONE MARROW TRANSPLANTATION, 52(2), 183–90. -
Household triclosan and triclocarban effects on the infant and maternal microbiome.
Ribado, J. V., Ley, C., Haggerty, T. D., Tkachenko, E., Bhatt, A. S., & Parsonnet, J. (2017). Household triclosan and triclocarban effects on the infant and maternal microbiome. EMBO Molecular Medicine, 9(12), 1732–41. -
Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients.
Moss, E. L., Falconer, S. B., Tkachenko, E., Wang, M., Systrom, H., Mahabamunuge, J., … Bhatt, A. S. (2017). Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients. PloS One, 12(8), e0182585. -
The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future.
Andermann, T. M., Peled, J. U., Ho, C., Reddy, P., Riches, M., Storb, R., … Bhatt, A. S. (2018). The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future. Biology of Blood and Marrow Transplantation : Journal of the American Society for Blood and Marrow Transplantation. -
Launching an Interactive Cancer Projects Map: A Collaborative Approach to Global Cancer Research and Program Development.
Trimble, E. L., Chisti, A. A., Craycroft, J. A., Duncan, K., Gupta, M., Gutierrez, D., … Bhatt, A. S. (2015). Launching an Interactive Cancer Projects Map: A Collaborative Approach to Global Cancer Research and Program Development. Journal of Global Oncology, 1(1), 7–10. -
Technological solutions for global hematology and oncology
Bhatt, A. S. (2017). Technological solutions for global hematology and oncology. BLOOD ADVANCES, 1(6), 396. -
Fecal Microbiota Transplant Is a Potentially Safe and Effective Treatment for Clostridium Difficile Infection in Hematopoietic Stem Cell Recipients
Falconer, S., Moss, E., Andermann, T., Systrom, H., Mahabamunuge, J., Hohmann, E., & Bhatt, A. S. (2016). Fecal Microbiota Transplant Is a Potentially Safe and Effective Treatment for Clostridium Difficile Infection in Hematopoietic Stem Cell Recipients. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION, 22(3), S53–S54. -
Allied Commensal Forces against Vancomycin-Resistant Enterococci
Fremin, B. J., & Bhatt, A. S. (2017). Allied Commensal Forces against Vancomycin-Resistant Enterococci. CELL HOST & MICROBE, 21(5), 559–60. -
Bacillus Cereus: A Leukemia-Specific, Neuroinvasive Pathogen?
Rhee, C., Manzo, V., Shea, T., Desjardins, C., van der Auwera, G., Young, S., … Bhatt, A. S. (2014). Bacillus Cereus: A Leukemia-Specific, Neuroinvasive Pathogen? BLOOD, 124(21). -
AGBT meeting report
Bhatt, A. S., & Curtis, C. (2018). AGBT meeting report. GENOME BIOLOGY, 19, 60. -
Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.
Tropini, C., Moss, E. L., Merrill, B. D., Ng, K. M., Higginbottom, S. K., Casavant, E. P., … Sonnenburg, J. L. (2018). Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota. Cell, 173(7), 1742. -
A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.
Jacobson, A., Lam, L., Rajendram, M., Tamburini, F., Honeycutt, J., Pham, T., … Monack, D. (2018). A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection. Cell Host & Microbe. -
In Translation: With probiotics, resistance is not always futile
Severyn, C. J., & Bhatt, A. S. (2018). In Translation: With probiotics, resistance is not always futile. Cell Host & Microbe , 24. -
Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes.
Lopez-Pineda, A., Rodriguez-Moran, M. F., Alvarez-Aguilar, C., Fuentes Valle, S. M., Acosta-Rosales, R., Bhatt, A. S., … Bustamante, C. D. (2018). Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes. BMC Cancer, 18(1), 933. -
Antibiotic practice patterns in hematopoietic cell transplantation: A survey of blood and marrow transplant clinical trials network centers
Rashidi, A., Wangjam, T., Bhatt, A. S., Weisdorf, D. J., & Holtan, S. G. (2018). Antibiotic practice patterns in hematopoietic cell transplantation: A survey of blood and marrow transplant clinical trials network centers. AMERICAN JOURNAL OF HEMATOLOGY, 93(11), E348–E350. -
Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate.
Bendapudi, P. K., Robbins, A., LeBoeuf, N., Pozdnyakova, O., Bhatt, A., Duke, F., … Losman, J.-A. (2018). Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate. Blood Advances, 2(21), 2917–21. -
Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine.
Wang, J. K., Roy, S. K., Barry, M., Chang, R. T., & Bhatt, A. S. (2018). Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine. BMC Medical Education, 18(1), 269. -
Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016.
Senchyna, F., Gaur, R. L., Sandlund, J., Truong, C., Tremintin, G., Kultz, D., … Banaei, N. (2018). Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016. Diagnostic Microbiology and Infectious Disease. -
Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool.
Nwachukwu, C. R., Mudasiru, O., Million, L., Sheth, S., Qamoos, H., Onah, J. O., … Bhatt, A. S. (2018). Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool. Journal of Global Oncology, (4), 1–9. -
Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation.
Englert, J. A., Cho, M. H., Lamb, A. E., Shumyatcher, M., Barragan-Bradford, D., Basil, M. C., … Baron, R. M. (2019). Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation. Respiratory Research, 20(1), 15. -
Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient
Kang, J., Siranosian, B., Moss, E., Andermann, T., & Bhatt, A. (2018). Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient. PROCEEDINGS 2018 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 234–41. -
With Probiotics, Resistance Is Not Always Futile.
Severyn, C. J., & Bhatt, A. S. (2018). With Probiotics, Resistance Is Not Always Futile. Cell Host & Microbe, 24(3), 334–36. -
Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation.
Andermann, T. M., Rezvani, A., & Bhatt, A. S. (2016). Microbiota Manipulation With Prebiotics and Probiotics in Patients Undergoing Stem Cell Transplantation. Current Hematologic Malignancy Reports. -
Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool
Nwachukwu, C. R., Mudasiru, O., Million, L., Sheth, S., Qamoos, H., Onah, J. O., … Bhatt, A. S. (2018). Evaluating Barriers and Opportunities in Delivering High-Quality Oncology Care in a Resource-Limited Setting Using a Comprehensive Needs Assessment Tool. JOURNAL OF GLOBAL ONCOLOGY, 4. -
Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation
Englert, J. A., Cho, M. H., Lamb, A. E., Shumyatcher, M., Barragan-Bradford, D., Basil, M. C., … Baron, R. M. (2019). Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation. RESPIRATORY RESEARCH, 20. -
The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future
Andermann, T. M., Peled, J. U., Ho, C., Reddy, P., Riches, M., Storb, R., … Bhatt, A. S. (2018). The Microbiome and Hematopoietic Cell Transplantation: Past, Present, and Future. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION, 24(7), 1322–40. -
Microbiome genome structure drives function.
Durrant, M. G., & Bhatt, A. S. (2019). Microbiome genome structure drives function. Nature Microbiology, 4(6), 912–13. -
Making the microbiome personal
Bhatt, A. S. (2019). Making the microbiome personal. NATURE MEDICINE, 25(5), 708. -
Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016
Senchyna, F., Gaur, R. L., Sandlund, J., Truong, C., Tremintin, G., Kutz, D., … Banaei, N. (2019). Diversity of resistance mechanisms in carbapenem-resistant Enterobacteriaceae at a health care system in Northern California, from 2013 to 2016. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 93(3), 250–57. -
Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine
Wang, J. K., Roy, S. K., Barry, M., Chang, R. T., & Bhatt, A. S. (2018). Institutionalizing healthcare hackathons to promote diversity in collaboration in medicine. BMC MEDICAL EDUCATION, 18. -
Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate
Bendapudi, P. K., Robbins, A., LeBoeuf, N., Pozdnyakova, O., Bhatt, A., Duke, F., … Losman, J.-A. (2018). Persistence of endothelial thrombomodulin in a patient with infectious purpura fulminans treated with protein C concentrate. BLOOD ADVANCES, 2(21), 2917–21. -
Precision identification of diverse bloodstream pathogens in the gut microbiome
Tamburini, F. B., Andermann, T. M., Tkachenko, E., Senchyna, F., Banaei, N., & Bhatt, A. S. (2018). Precision identification of diverse bloodstream pathogens in the gut microbiome. NATURE MEDICINE, 24(12), 1809-+. -
High-quality genome sequences of uncultured microbes by assembly of read clouds
Bishara, A., Moss, E. L., Kolmogorov, M., Parada, A. E., Weng, Z., Sidow, A., … Bhatt, A. S. (2018). High-quality genome sequences of uncultured microbes by assembly of read clouds. NATURE BIOTECHNOLOGY, 36(11), 1067-+. -
Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes
Lopez-Pineda, A., Rodriguez-Moran, M. F., Alvarez-Aguilar, C., Fuentes Valle, S. M., Acosta-Rosales, R., Bhatt, A. S., … Bustamante, C. D. (2018). Data mining of digitized health records in a resource-constrained setting reveals that timely immunophenotyping is associated with improved breast cancer outcomes. BMC CANCER, 18. -
Digesting New Developments in Biosensors
Bhatt, A. S. (2018). Digesting New Developments in Biosensors. NEW ENGLAND JOURNAL OF MEDICINE, 379(7), 686–88. -
A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection
Jacobson, A., Lam, L., Rajendram, M., Tamburini, F., Honeycutt, J., Trung Pham, … Monack, D. (2018). A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection. CELL HOST & MICROBE, 24(2), 296-+. -
Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota
Tropini, C., Moss, E. L., Merrill, B. D., Ng, K. M., Higginbottom, S. K., Casavant, E. P., … Sonnenburg, J. L. (2018). Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota. CELL, 173(7), 1742-+. -
Household triclosan and triclocarban effects on the infant and maternal microbiome
Ribado, J. V., Ley, C., Haggerty, T. D., Tkachenko, E., Bhatt, A. S., & Parsonnet, J. (2017). Household triclosan and triclocarban effects on the infant and maternal microbiome. EMBO MOLECULAR MEDICINE, 9(12), 1732–41. -
Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation.
Brewster, R., Tamburini, F. B., Asiimwe, E., Oduaran, O., Hazelhurst, S., & Bhatt, A. S. (2019). Surveying Gut Microbiome Research in Africans: Toward Improved Diversity and Representation. Trends in Microbiology. -
Mapping global cancer research and control in areas of low and middle income: The need for shared data on a single, interactive platform
Chisti, A., Sharara, N., Gupta, M., Rosenberg, I., Abudu, R., Morgan, C., … Huang, F. W. (2016). Mapping global cancer research and control in areas of low and middle income: The need for shared data on a single, interactive platform. JOURNAL OF CLINICAL ONCOLOGY, 34(15). -
Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes.
Sberro, H., Fremin, B. J., Zlitni, S., Edfors, F., Greenfield, N., Snyder, M. P., … Bhatt, A. S. (2019). Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. -
Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang, J. B., Siranosian, B. A., Moss, E. L., Banaei, N., Andermann, T. M., & Bhatt, A. S. (2019). Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly. BMC Bioinformatics, 20(Suppl 16), 585. -
A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation.
Durrant, M. G., Li, M. M., Siranosian, B. A., Montgomery, S. B., & Bhatt, A. S. (2019). A Bioinformatic Analysis of Integrative Mobile Genetic Elements Highlights Their Role in Bacterial Adaptation. Cell Host & Microbe. -
Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages.
Siranosian, B. A., Tamburini, F. B., Sherlock, G., & Bhatt, A. S. (2020). Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages. Nature Communications, 11(1), 280. -
Complete, closed bacterial genomes from microbiomes using nanopore sequencing.
Moss, E. L., Maghini, D. G., & Bhatt, A. S. (2020). Complete, closed bacterial genomes from microbiomes using nanopore sequencing. Nature Biotechnology. -
A mountable toilet system for personalized health monitoring via the analysis of excreta.
Park, S.-M. M., Won, D. D., Lee, B. J., Escobedo, D., Esteva, A., Aalipour, A., … Gambhir, S. S. (2020). A mountable toilet system for personalized health monitoring via the analysis of excreta. Nature Biomedical Engineering. -
The gastrointestinal microbiota controls cancer cell intrinsic mechanisms to promote the progression of acute lymphoblastic leukemia.
Mahauad-Fernandez, W., Zlitni, S., Bhatt, A., & Felsher, D. (2020). The gastrointestinal microbiota controls cancer cell intrinsic mechanisms to promote the progression of acute lymphoblastic leukemia. CANCER RESEARCH, 80(8), 58–59. -
Assessing and Addressing the Need for Cancer Patient Education in a Resource-Limited Setting in Haiti.
Schleimer, L. E., Desameau, P.-G., Damuse, R., Olsen, M., Manzo, V., Cardenas, C., … Huang, F. W. (2020). Assessing and Addressing the Need for Cancer Patient Education in a Resource-Limited Setting in Haiti. The Oncologist. -
GUT DECONTAMINATION ALTERS THE INTESTINAL MICROBIOTA DURING ALLOGENIC BONE MARROW TRANSPLANT
Severyn, C., London, W., Kao, P., Silverstein, S., Li, M., Verrill, K., … Whangbo, J. (2020). GUT DECONTAMINATION ALTERS THE INTESTINAL MICROBIOTA DURING ALLOGENIC BONE MARROW TRANSPLANT. PEDIATRIC BLOOD & CANCER. WILEY. -
Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale.
Zlitni, S., Bishara, A., Moss, E. L., Tkachenko, E., Kang, J. B., Culver, R. N., … Bhatt, A. S. (2020). Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale. Genome Medicine, 12(1), 50. -
Glucagon like peptide-2 for Intestinal stem cell and Paneth cell repair during graft-versus-host disease in mice and humans.
Norona, J., Apostolova, P., Schmidt, D., Ihlemann, R., Reischmann, N., Taylor, G., … Zeiser, R. (2020). Glucagon like peptide-2 for Intestinal stem cell and Paneth cell repair during graft-versus-host disease in mice and humans. Blood. -
MetaRibo-Seq measures translation in microbiomes.
Fremin, B. J., Sberro, H., & Bhatt, A. S. (2020). MetaRibo-Seq measures translation in microbiomes. Nature Communications, 11(1), 3268. -
Microbes and microbiomes in 2020 and beyond.
Natarajan, A., & Bhatt, A. S. (2020). Microbes and microbiomes in 2020 and beyond. Nature Communications, 11(1), 4988. -
Structured RNA Contaminants in Bacterial Ribo-Seq.
Fremin, B. J., & Bhatt, A. S. (2020). Structured RNA Contaminants in Bacterial Ribo-Seq. MSphere, 5(5). -
Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition.
Oduaran, O. H., Tamburini, F. B., Sahibdeen, V., Brewster, R., Gomez-Olive, F. X., Kahn, K., … Hazelhurst, S. (2020). Gut microbiome profiling of a rural and urban South African cohort reveals biomarkers of a population in lifestyle transition. BMC Microbiology, 20(1), 330. -
Recommendations from the ASCO Academic Global Oncology Task Force.
Gralow, J. R., Asirwa, F. C., Bhatt, A. S., Bourlon, M. T., Chu, Q., Eniu, A. E., … Pyle, D. (2020). Recommendations from the ASCO Academic Global Oncology Task Force. JCO Global Oncology, 6, 1666–73. -
Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome.
Maghini, D. G., Moss, E. L., Vance, S. E., & Bhatt, A. S. (2020). Improved high-molecular-weight DNA extraction, nanopore sequencing and metagenomic assembly from the human gut microbiome. Nature Protocols. -
Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes.
Durrant, M. G., & Bhatt, A. S. (2020). Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes. Cell Host & Microbe. -
Distinct Immune Regulatory Potential of Invariant Natural Killer T (iNKT) Cell Subsets: iNKT2 and iNKT17, but Not iNKT1, Protect from Graft-Versus-Host-Disease
Simonetta, F., Maas-Bauer, K., Hirai, T., Wenokur, A., Fazal, F. M., Kambham, N., … Negrin, R. S. (2019). Distinct Immune Regulatory Potential of Invariant Natural Killer T (iNKT) Cell Subsets: iNKT2 and iNKT17, but Not iNKT1, Protect from Graft-Versus-Host-Disease. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION. ELSEVIER SCIENCE INC. -
Longitudinal Changes in the Intestinal Microbiome Composition Following Gut Decontamination in Pediatric Allogeneic Hematopoietic Stem Cell Transplant Patients: A Pilot Study
Severyn, C., London, W. B., Kao, P., Silverstein, S., Li, M., Kim, S., … Whangbo, J. (2019). Longitudinal Changes in the Intestinal Microbiome Composition Following Gut Decontamination in Pediatric Allogeneic Hematopoietic Stem Cell Transplant Patients: A Pilot Study. BLOOD. AMER SOC HEMATOLOGY. -
Making Progress in Graft-Versus-Host Disease Prophylaxis and Microbiome Analysis in the Blood and Marrow Transplant Clinical Trials Network: Progress III (1703)/MI-Immune (1801)
Holtan, S., Bhatt, A. S., Fraser, R., Perales, M.-A., Kean, L., Saber, W., … Bolanos-Meade, J. (2019). Making Progress in Graft-Versus-Host Disease Prophylaxis and Microbiome Analysis in the Blood and Marrow Transplant Clinical Trials Network: Progress III (1703)/MI-Immune (1801). BLOOD, 134. -
The Gut Microbiome: A Missing Link in Understanding the Gastrointestinal manifestations of COVID-19?
Brooks, E., & Bhatt, A. S. (2021). The Gut Microbiome: A Missing Link in Understanding the Gastrointestinal manifestations of COVID-19? Cold Spring Harbor Molecular Case Studies. -
Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial.
Jagannathan, P., Andrews, J. R., Bonilla, H., Hedlin, H., Jacobson, K. B., Balasubramanian, V., … Singh, U. (2021). Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial. Nature Communications, 12(1), 1967. -
Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient.
Kang, J., Siranosian, B., Moss, E., Andermann, T., & Bhatt, A. (2018). Read cloud sequencing elucidates microbiome dynamics in a hematopoietic cell transplant patient. Proceedings. IEEE International Conference on Bioinformatics and Biomedicine, 2018, 234–241. -
Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes.
Fremin, B. J., & Bhatt, A. S. (2021). Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes. Genome Biology, 22(1), 100. -
Invariant Natural Killer T Cell Subsets Have Diverse Graft-Versus-Host-Disease-Preventing and Anti-Tumor Effects.
Maas-Bauer, K., Lohmeyer, J. K., Hirai, T., Lopes Ramos, T., Fazal, F. M., Litzenburger, U. M., … Negrin, R. S. (2021). Invariant Natural Killer T Cell Subsets Have Diverse Graft-Versus-Host-Disease-Preventing and Anti-Tumor Effects. Blood. -
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome.
Nayfach, S., Paez-Espino, D., Call, L., Low, S. J., Sberro, H., Ivanova, N. N., … Kyrpides, N. C. (2021). Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nature Microbiology. -
A fructo-oligosaccharide prebiotic is well-tolerated in adults undergoing allogeneic hematopoietic stem cell transplantation: a phase I dose-escalation trial.
Andermann, T. M., Fouladi, F., Tamburini, F. B., Sahaf, B., Tkachenko, E., Greene, C., … Bhatt, A. S. (2021). A fructo-oligosaccharide prebiotic is well-tolerated in adults undergoing allogeneic hematopoietic stem cell transplantation: a phase I dose-escalation trial. Transplantation and Cellular Therapy. -
Simultaneous ribosome profiling of hundreds of microbes from the human microbiome.
Fremin, B. J., Nicolaou, C., & Bhatt, A. S. (2021). Simultaneous ribosome profiling of hundreds of microbes from the human microbiome. Nature Protocols. -
Comparative genomics of Enterobacter cloacae complex before and after acquired clinical resistance to Ceftazidime-Avibactam.
Senchyna, F., Tamburini, F. B., Murugesan, K., Watz, N., Bhatt, A. S., & Banaei, N. (2021). Comparative genomics of Enterobacter cloacae complex before and after acquired clinical resistance to Ceftazidime-Avibactam. Diagnostic Microbiology and Infectious Disease, 101(4), 115511. -
Identification of covalent inhibitors that disrupt M. tuberculosis growth by targeting multiple serine hydrolases involved in lipid metabolism.
Babin, B. M., Keller, L. J., Pinto, Y., Li, V. L., Eneim, A. S., Vance, S. E., … Bogyo, M. (2021). Identification of covalent inhibitors that disrupt M. tuberculosis growth by targeting multiple serine hydrolases involved in lipid metabolism. Cell Chemical Biology. -
Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.
Natarajan, A., Han, A., Zlitni, S., Brooks, E. F., Vance, S. E., Wolfe, M., … Bhatt, A. S. (2021). Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications, 12(1), 5753. -
Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.
Natarajan, A., Han, A., Zlitni, S., Brooks, E. F., Vance, S. E., Wolfe, M., … Bhatt, A. S. (2021). Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. MedRxiv : the Preprint Server for Health Sciences. -
Reporting guidelines for human microbiome research: the STORMS checklist.
Mirzayi, C., Renson, A., Zohra, F., Elsafoury, S., Geistlinger, L., Kasselman, L. J., … Waldron, L. (2021). Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. -
Implementing Patient-Directed Cancer Education Materials Across Nigeria.
Dickerson, J. C., Ibeka, P., Inoyo, I., Oke, O. O., Adewuyi, S. A., Barry, D., … Roy, M. (2021). Implementing Patient-Directed Cancer Education Materials Across Nigeria. JCO Global Oncology, 7, 1610–1619. -
Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults.
Siranosian, B. A., Brooks, E. F., Andermann, T., Rezvani, A. R., Banaei, N., Tang, H., & Bhatt, A. S. (1800). Rare transmission of commensal and pathogenic bacteria in the gut microbiome of hospitalized adults. Nature Communications, 13(1), 586. -
Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa.
Tamburini, F. B., Maghini, D., Oduaran, O. H., Brewster, R., Hulley, M. R., Sahibdeen, V., … Bhatt, A. S. (2022). Short- and long-read metagenomics of urban and rural South African gut microbiomes reveal a transitional composition and undescribed taxa. Nature Communications, 13(1), 926. -
Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation
Severyn, C. J. (2022). Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation. JCI Insight. -
Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation.
Severyn, C. J., Siranosian, B. A., Kong, S. T.-J., Moreno, A., Li, M. M., Chen, N., … Whangbo, J. S. (2022). Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation. JCI Insight. -
Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection.
Natarajan, A., Zlitni, S., Brooks, E. F., Vance, S. E., Dahlen, A., Hedlin, H., … Bhatt, A. S. (2022). Gastrointestinal symptoms and fecal shedding of SARS-CoV-2 RNA suggest prolonged gastrointestinal infection. Med (New York, N.Y.). -
Y A pilot study of gut decontamination and the risk of bloodstream infections during pediatric allogeneic hematopoietic cell transplantation
Severyn, C. J., Siranosian, B. A., Kong, S. T.-J., Chen, N., London, W. B., Bhatt, A. S., & Whangbo, J. S. (2022). Y A pilot study of gut decontamination and the risk of bloodstream infections during pediatric allogeneic hematopoietic cell transplantation. PEDIATRIC BLOOD & CANCER. WILEY. -
A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients.
Yan, J., Liao, C., Taylor, B. P., Fontana, E., Amoretti, L. A., Wright, R. J., … Xavier, J. B. (2022). A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients. Scientific Data, 9(1), 219. -
Thousands of small, novel genes predicted in global phage genomes.
Fremin, B. J., Bhatt, A. S., & Kyrpides, N. C. (2022). Thousands of small, novel genes predicted in global phage genomes. Cell Reports, 39(12), 110984. -
SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level
Zambrana, W., Catoe, D., Coffman, M. M., Kim, S., Anand, A., Solis, D., … Wolfe, M. K. (2022). SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level. ACS ES&T WATER. -
Near-fatal Legionella pneumonia in a neonate linked to home humidifier by metagenomic next generation sequencing.
West, P. T., Brooks, E. F., Costales, C., Moreno, A., Jensen, T. D., Budvytiene, I., … Banaei, N. (2022). Near-fatal Legionella pneumonia in a neonate linked to home humidifier by metagenomic next generation sequencing. Med (New York, N.Y.). -
From genome structure to function: insights into structural variation in microbiology.
West, P. T., Chanin, R. B., & Bhatt, A. S. (2022). From genome structure to function: insights into structural variation in microbiology. Current Opinion in Microbiology, 69, 102192. -
MI-Immune/1801: Lessons from an Ongoing, Multi-Center Trial Involving Biospecimen Collection for Prospective Microbiome and Immune Profiling in Patients Undergoing Reduced Intensity Conditioning Allogeneic HCT
Brooks, E., Spahn, A., Waldvogel, S., Howard, A., Bar, M., Bratrude, B., … Bhatt, A. S. (2021). MI-Immune/1801: Lessons from an Ongoing, Multi-Center Trial Involving Biospecimen Collection for Prospective Microbiome and Immune Profiling in Patients Undergoing Reduced Intensity Conditioning Allogeneic HCT. BLOOD. AMER SOC HEMATOLOGY. -
Equitable partnerships and the path to inclusive, innovative and impactful human microbiome research.
Oduaran, O. H., & Bhatt, A. S. (2022). Equitable partnerships and the path to inclusive, innovative and impactful human microbiome research. Nature Reviews. Gastroenterology & Hepatology. -
Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome.
Durrant, M. G., Fanton, A., Tycko, J., Hinks, M., Chandrasekaran, S. S., Perry, N. T., … Hsu, P. D. (2022). Systematic discovery of recombinases for efficient integration of large DNA sequences into the human genome. Nature Biotechnology. -
Updated demographics at the only public oncology clinic in Belize.
Wong, W., Dickerson, J., Sood, R., Valtis, Y., Yacab, R. A., Lattin, J., … Huang, F. W. (2022). Updated demographics at the only public oncology clinic in Belize. JOURNAL OF CLINICAL ONCOLOGY. LIPPINCOTT WILLIAMS & WILKINS. -
Breast cancer characteristics and time to chemotherapy initiation in Belize.
Wong, W., Dickerson, J., Sood, R., Yacab, R. A., Valtis, Y., Lattin, J., … Huang, F. W. (2022). Breast cancer characteristics and time to chemotherapy initiation in Belize. JOURNAL OF CLINICAL ONCOLOGY. LIPPINCOTT WILLIAMS & WILKINS. -
Efficacy of an educational comic book for HPV vaccination information in Nigeria.
Roy, M., Saleem, A., Said, A., Inoyo, I. E., Garrity, P., Bashorun, Y., … Bhatt, A. S. (2022). Efficacy of an educational comic book for HPV vaccination information in Nigeria. JOURNAL OF CLINICAL ONCOLOGY. LIPPINCOTT WILLIAMS & WILKINS. -
Human ß-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling.
Rückert, T., Andrieux, G., Boerries, M., Hanke-Müller, K., Woessner, N. M., Doetsch, S., … Köhler, N. (2022). Human ß-defensin 2 ameliorates acute GVHD by limiting ileal neutrophil infiltration and restraining T cell receptor signaling. Science Translational Medicine, 14(676), eabp9675. -
Post-Transplant Cyclophosphamide, Tacrolimus, and Mycophenolate Mofetil As the New Standard for Graft-Versus-Host Disease (GVHD) Prophylaxis in Reduced Intensity Conditioning: Results from Phase III BMT CTN 1703
Holtan, S. G., Hamadani, M., Wu, J., Al Malki, M. M., Runaas, L., Elmariah, H., … Bolanos-Meade, J. (2022). Post-Transplant Cyclophosphamide, Tacrolimus, and Mycophenolate Mofetil As the New Standard for Graft-Versus-Host Disease (GVHD) Prophylaxis in Reduced Intensity Conditioning: Results from Phase III BMT CTN 1703. BLOOD. AMER SOC HEMATOLOGY. -
Cancer Demographics and Time-to-Care in Belize.
Wong, W., Dickerson, J. C., Valtis, Y. K., Habet, M., Bernard, M., Kelly, L., … Yacab, R. (2023). Cancer Demographics and Time-to-Care in Belize. The Oncologist. -
Antimicrobial exposure is associated with decreased survival in triple-negative breast cancer.
Ransohoff, J. D., Ritter, V., Purington, N., Andrade, K., Han, S., Liu, M., … Kurian, A. W. (2023). Antimicrobial exposure is associated with decreased survival in triple-negative breast cancer. Nature Communications, 14(1), 2053. -
Quantifying bias introduced by sample collection in relative and absolute microbiome measurements.
Maghini, D. G., Dvorak, M., Dahlen, A., Roos, M., Kuersten, S., & Bhatt, A. S. (2023). Quantifying bias introduced by sample collection in relative and absolute microbiome measurements. Nature Biotechnology. -
Intragenic DNA inversions expand bacterial coding capacity.
Chanin, R. B., West, P. T., Park, R. M., Wirbel, J., Green, G. Z., Miklos, A. M., … Bhatt, A. S. (2023). Intragenic DNA inversions expand bacterial coding capacity. BioRxiv : the Preprint Server for Biology. -
Phage-inclusive profiling of human gut microbiomes with Phanta.
Pinto, Y., Chakraborty, M., Jain, N., & Bhatt, A. S. (2023). Phage-inclusive profiling of human gut microbiomes with Phanta. Nature Biotechnology. -
Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases.
Haddock, N. L., Barkal, L. J., Ram-Mohan, N., Kaber, G., Chiu, C. Y., Bhatt, A. S., … Bollyky, P. L. (2023). Phage diversity in cell-free DNA identifies bacterial pathogens in human sepsis cases. Nature Microbiology. -
The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia.
Schluter, J., Djukovic, A., Taylor, B. P., Yan, J., Duan, C., Hussey, G. A., … Xavier, J. B. (2023). The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia. Cell Host & Microbe. -
Post-Transplantation Cyclophosphamide-Based Graft-versus-Host Disease Prophylaxis.
Bolaños-Meade, J., Hamadani, M., Wu, J., Al Malki, M. M., Martens, M. J., Runaas, L., … Holtan, S. G. (2023). Post-Transplantation Cyclophosphamide-Based Graft-versus-Host Disease Prophylaxis. The New England Journal of Medicine, 388(25), 2338–2348. -
Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron.
Keller, L. J., Nguyen, T. H., Liu, L. J., Hurysz, B. M., Lakemeyer, M., Guerra, M., … Bogyo, M. (2023). Chemoproteomic identification of a DPP4 homolog in Bacteroides thetaiotaomicron. Nature Chemical Biology. -
The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker.
Natarajan, A., Fremin, B. J., Schmidtke, D. T., Wolfe, M. K., Zlitni, S., Graham, K. E., … Boehm, A. B. (2023). The Tomato Brown Rugose Fruit Virus Movement Protein Gene Is a Novel Microbial Source Tracking Marker. Applied and Environmental Microbiology, e0058323. -
SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level.
Zambrana, W., Catoe, D., Coffman, M. M., Kim, S., Anand, A., Solis, D., … Wolfe, M. K. (2022). SARS-CoV-2 RNA and N Antigen Quantification via Wastewater at the Campus Level, Building Cluster Level, and Individual-Building Level. ACS ES&T Water, 2(11), 2025–33. -
Human gut metagenomic mining reveals an untapped source of peptide antibiotics.
Torres, M. D., Brooks, E., Cesaro, A., Sberro, H., Nicolaou, C., Bhatt, A. S., & de la Fuente-Nunez, C. (2023). Human gut metagenomic mining reveals an untapped source of peptide antibiotics. BioRxiv : the Preprint Server for Biology. -
Acute steroid-refractory GI GVHD is not associated with significant differences in gut taxonomic composition compared to steroid-sensitive GI GVHD immediately prior to onset of disease: GI GVHD is not characterized by gut microbial differences preceding symptom onset.
Zeng, K., Brewster, R., Kang, J. B., Tkachenko, E., Brooks, E., Bhatt, A. S., … Andermann, T. M. (2023). Acute steroid-refractory GI GVHD is not associated with significant differences in gut taxonomic composition compared to steroid-sensitive GI GVHD immediately prior to onset of disease: GI GVHD is not characterized by gut microbial differences preceding symptom onset. Transplantation and Cellular Therapy. -
Identification of over ten thousand candidate structured RNAs in viruses and phages.
Fremin, B. J., Bhatt, A. S., & Kyrpides, N. C. (2023). Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and Structural Biotechnology Journal, 21, 5630–5639. -
Hybrid assemblies of microbiomeBlastocystisprotists reveal evolutionary diversification reflecting host ecology.
Lind, A. L., McDonald, N. A., Gerrick, E. R., Bhatt, A. S., & Pollard, K. S. (2023). Hybrid assemblies of microbiomeBlastocystisprotists reveal evolutionary diversification reflecting host ecology. BioRxiv : the Preprint Server for Biology. -
Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition.
Gerrick, E. R., Zlitni, S., West, P. T., Carter, M. M., Mechler, C. M., Olm, M. R., … Howitt, M. R. (2023). Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition. Cell. -
Viroid-like colonists of human microbiomes.
Zheludev, I. N., Edgar, R. C., Lopez-Galiano, M. J., de la Pena, M., Babaian, A., Bhatt, A. S., & Fire, A. Z. (2024). Viroid-like colonists of human microbiomes. BioRxiv : the Preprint Server for Biology. -
The journey to understand previously unknown microbial genes.
Wirbel, J., Bhatt, A. S., & Probst, A. J. (2024). The journey to understand previously unknown microbial genes. Nature. -
Large-Scale Post-Transplant TCR Deep Sequencing Reveals a Major T Cell Diversity Bottleneck with Post-Transplant Cyclophosphamide with Implications for Both Efficacy and Toxicity: Results of the BMT CTN 1801 Study
Kean, L., Siegel, S. J., Schmalz, J. T., Bien, S. A., Scheffey, D., Sanders, C., … DeWolf, S. (2023). Large-Scale Post-Transplant TCR Deep Sequencing Reveals a Major T Cell Diversity Bottleneck with Post-Transplant Cyclophosphamide with Implications for Both Efficacy and Toxicity: Results of the BMT CTN 1801 Study. BLOOD. AMER SOC HEMATOLOGY.
Clinical Trials
Clinical trials are research studies that evaluate a new medical approach, device, drug, or other treatment. As a Stanford Health Care patient, you may have access to the latest, advanced clinical trials.
Open trials refer to studies currently accepting participants. Closed trials are not currently enrolling, but may open in the future.
- Fructooligosaccharides in Treating Patients With Blood Cancer Undergoing Donor Stem Cell Transplant »
- TAC/MTX vs. TAC/MMF/PTCY for Prevention of Graft-versus-Host Disease and Microbiome and Immune Reconstitution Study (BMT CTN 1703/1801) »
- Oral Favipiravir Compared to Placebo in Subjects With Mild COVID-19 »
- Single-Blind Study of a Single Dose of Peginterferon Lambda-1a Compared With Placebo in Outpatients With Mild COVID-19 »
Practice Locations
Hematologic Cancer Program Palo Alto, CA
Palo Alto, CAHematologic Cancer Program
875 Blake Wilbur Drive
Palo Alto , CA 94304
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Referring Physicians
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