Germinal centre protein HGAL promotes lymphoid hyperplasia and amyloidosis via BCR-mediated Syk activation
Romero-Camarero, I., Jiang, X., Natkunam, Y., Lu, X., Vicente-Duenas, C., Gonzalez-Herrero, I., … Lossos, I. S. (2013). Germinal centre protein HGAL promotes lymphoid hyperplasia and amyloidosis via BCR-mediated Syk activation. NATURE COMMUNICATIONS, 4.

Refractory warm IgM-mediated autoimmune hemolytic anemia associated with Churg-Strauss syndrome responsive to eculizumab and rituximab
Chao, M. P., Hong, J., Kunder, C., Lester, L., Schrier, S. L., & Majeti, R. (2015). Refractory warm IgM-mediated autoimmune hemolytic anemia associated with Churg-Strauss syndrome responsive to eculizumab and rituximab. AMERICAN JOURNAL OF HEMATOLOGY, 90(1), 78–81.

Noninvasive monitoring of diffuse large B-cell lymphoma by immunoglobulin high-throughput sequencing.
Kurtz, D. M., Green, M. R., Bratman, S. V., Scherer, F., Liu, C. L., Kunder, C. A., … Alizadeh, A. A. (2015). Noninvasive monitoring of diffuse large B-cell lymphoma by immunoglobulin high-throughput sequencing. Blood, 125(24), 3679–87.

Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA
Scherer, F., Kurtz, D. M., Newman, A. M., Stehr, H., Craig, A. F. M., Esfahani, M. S., … Alizadeh, A. A. (2016). Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA. SCIENCE TRANSLATIONAL MEDICINE, 8(364).

Diagnosis of prostate cancer by desorption electrospray ionization mass spectrometric imaging of small metabolites and lipids
Banerjee, S., Zare, R. N., Tibshirani, R. J., Kunder, C. A., Nolley, R., Fan, R., … Sonn, G. A. (2017). Diagnosis of prostate cancer by desorption electrospray ionization mass spectrometric imaging of small metabolites and lipids. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(13), 3334–39.

PS01.67: Case Series of MET Exon 14 Skipping Mutation-Positive Non-Small Cell Lung Cancers and Response to Crizotinib: Topic: Medical Oncology.
Wang, S. X., Zhang, B. M., Wakelee, H., Diehn, M., Kunder, C. A., & Neal, J. W. (2016). PS01.67: Case Series of MET Exon 14 Skipping Mutation-Positive Non-Small Cell Lung Cancers and Response to Crizotinib: Topic: Medical Oncology. Journal of Thoracic Oncology , 11(11S), S312–S313.

Case Series of MET Exon 14 Skipping Mutation-positive Non-Small Cell Lung Cancers and Response to Crizotinib.
Wang, S. X., Zhang, B., Wakelee, H. A., Diehn, M., Kunder, C., & Neal, J. W. (2017). Case Series of MET Exon 14 Skipping Mutation-positive Non-Small Cell Lung Cancers and Response to Crizotinib. International Journal of Radiation Oncology, Biology, Physics, 98(1), 239-?

Predominance of CD4+ T Cells in T-Cell/Histiocyte-Rich Large B-Cell Lymphoma and Identification of a Subset of Patients With Peripheral B-Cell Lymphopenia.
Kunder, C., Cascio, M. J., Bakke, A., Venkataraman, G., O'Malley, D. P., & Ohgami, R. S. (2017). Predominance of CD4+ T Cells in T-Cell/Histiocyte-Rich Large B-Cell Lymphoma and Identification of a Subset of Patients With Peripheral B-Cell Lymphopenia. American Journal of Clinical Pathology, 147(6), 596–603.

Development and Validation of Biopsy-Free Genotyping for Molecular Subtyping of Diffuse Large B-Cell Lymphoma
Scherer, F., Kurtz, D. M., Newman, A. M., Esfahani, M. S., Craig, A., Stehr, H., … Alizadeh, A. A. (2016). Development and Validation of Biopsy-Free Genotyping for Molecular Subtyping of Diffuse Large B-Cell Lymphoma. BLOOD. SAN DIEGO,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA,CA: AMER SOC HEMATOLOGY.

Development of RET mutant cutaneous angiosarcoma during BRAF inhibitor therapy.
Dai, J., Kunder, C. A., Chu, E. Y., Chan, E. F., Egan, C. L., & Novoa, R. A. (2017). Development of RET mutant cutaneous angiosarcoma during BRAF inhibitor therapy. Journal of Cutaneous Pathology.

Comprehensive Genomic Profiling of Malignant Effusions in Patients with Metastatic Lung Adenocarcinoma.
Yang, S.-R. R., Lin, C.-Y. Y., Stehr, H., Long, S. R., Kong, C. S., Berry, G. J., … Kunder, C. A. (2017). Comprehensive Genomic Profiling of Malignant Effusions in Patients with Metastatic Lung Adenocarcinoma. The Journal of Molecular Diagnostics : JMD.

in silico Long-Read Sequencing from FFPE Solid Tumor Tissue for Structural Variation Detection and Phasing in Archival Specimens
Costa, H. A., Blanchette, M., Bustamante, C. D., Green, R. E., Hadley, P. D., Kunder, C., … Zehnder, J. L. (2017). in silico Long-Read Sequencing from FFPE Solid Tumor Tissue for Structural Variation Detection and Phasing in Archival Specimens. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Concurrent Imatinib and Radiation Therapy for Unresectable and Symptomatic Desmoid Tumors.
Moding, E. J., Million, L., Avedian, R., Ghanouni, P., Kunder, C., & Ganjoo, K. N. (2017). Concurrent Imatinib and Radiation Therapy for Unresectable and Symptomatic Desmoid Tumors. Sarcoma, 2017, 2316839.

A Feedback-Based Training Module Improves Tumor Cellularity Estimation for Molecular Testing
Weiel, J. J., Silva, O., Mooney, K. L., Lin, C.-Y., & Kunder, C. A. (2017). A Feedback-Based Training Module Improves Tumor Cellularity Estimation for Molecular Testing. MODERN PATHOLOGY. NATURE PUBLISHING GROUP.

Noninvasive Genotyping and Assessment of Treatment Response in Diffuse Large B Cell Lymphoma
Scherer, F., Kurtz, D. M., Newman, A. M., Stehr, H., Liu, C. L., Zhou, L., … Alizadeh, A. A. (2015). Noninvasive Genotyping and Assessment of Treatment Response in Diffuse Large B Cell Lymphoma. BLOOD. AMER SOC HEMATOLOGY.

KLHL6 Is Preferentially Expressed in Germinal Center-Derived B-Cell Lymphomas
Kunder, C. A., Roncador, G., Advani, R. H., Gualco, G., Bacchi, C. E., Sabile, J. M., … Natkunam, Y. (2017). KLHL6 Is Preferentially Expressed in Germinal Center-Derived B-Cell Lymphomas. AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 148(6), 465–76.

Characterization of the Novel Germinal Center Marker KLHL6 in Human Lymphomas
Kunder, C. A., Zhao, S., Martinez, E. G., Roncador, G., Alizadeh, A. A., Lossos, I. S., & Natkunam, Y. (2013). Characterization of the Novel Germinal Center Marker KLHL6 in Human Lymphomas. LABORATORY INVESTIGATION. NATURE PUBLISHING GROUP.

HGAL-a Germinal Center Specific Protein, Enhances B-Cell Receptor Signaling by Activation of Syk, Leading to Follicular Lymphoproliferation
Jiang, X., Romero-Camarero, I., Lu, X., Vicente-Duenas, C., Gonzalez-Herrero, I., Flores, T., … Lossos, I. S. (2011). HGAL-a Germinal Center Specific Protein, Enhances B-Cell Receptor Signaling by Activation of Syk, Leading to Follicular Lymphoproliferation. BLOOD. AMER SOC HEMATOLOGY.

Molecular and Clinicopathologic Features Associated with PD-L1 Expression in Lung Adenocarcinoma
Yang, S., Steiner, D., Berry, G. J., Neal, J. W., Zehnder, J. L., & Kunder, C. A. (2017). Molecular and Clinicopathologic Features Associated with PD-L1 Expression in Lung Adenocarcinoma. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Survival and risk factors for progression after resection of the dominant tumor in multifocal, lepidic-type pulmonary adenocarcinoma
Gao, R. W., Berry, M. F., Kunder, C. A., Khuong, A. A., Wakelee, H., Neal, J. W., … Shrager, J. B. (2017). Survival and risk factors for progression after resection of the dominant tumor in multifocal, lepidic-type pulmonary adenocarcinoma. JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY, 154(6), 2092-+.

Presence of Even a Small Ground-Glass Component in Lung Adenocarcinoma Predicts Better Survival
Berry, M. F., Gao, R., Kunder, C. A., Backhus, L., Khuong, A., Kadoch, M., … Shrager, J. (2018). Presence of Even a Small Ground-Glass Component in Lung Adenocarcinoma Predicts Better Survival. CLINICAL LUNG CANCER, 19(1), E47–E51.

Serum miR371a Quantitation for Assessing Tumor Burden in Testicular Germ Cell Tumors
Kunder, C., Imae, Y., Srinivas, S., & Fan, A. C. (2018). Serum miR371a Quantitation for Assessing Tumor Burden in Testicular Germ Cell Tumors. MODERN PATHOLOGY, 31, 703.

Mass spectrometric imaging of prostate biopsy samples: Cancer margin assessment from the distribution of small metabolites and lipids
Banerjee, S., Zare, R. N., Tibshirani, R., Kunder, C., Nolley, R., Fan, R., … Sonn, G. (2017). Mass spectrometric imaging of prostate biopsy samples: Cancer margin assessment from the distribution of small metabolites and lipids. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. AMER CHEMICAL SOC.

Synchronous primary lung adenocarcinomas harboring distinct MET Exon 14 splice site mutations.
Wang, S. X., Lei, L., Guo, H. H., Shrager, J., Kunder, C. A., & Neal, J. W. (2018). Synchronous primary lung adenocarcinomas harboring distinct MET Exon 14 splice site mutations. Lung Cancer (Amsterdam, Netherlands), 122, 187–91.

Defining new drivers of castration- resistant prostate cancer
Hsu, E.-chi, Rice, M., Nolley, R., Bermudez, A., Huang, J., Peehl, D., … Stoyanova, T. (2018). Defining new drivers of castration- resistant prostate cancer. CANCER RESEARCH, 78(16), 90.

Methionine aminopeptidase II (MetAP2) activated in situ self-assembly of small-molecule probes for imaging prostate cancer.
Xie, J., Rice, M., Cheng, Y., Song, G., Kunder, C., Brooks, J. D., … Rao, J. (2018). Methionine aminopeptidase II (MetAP2) activated in situ self-assembly of small-molecule probes for imaging prostate cancer. CANCER RESEARCH, 78(16), 115–16.

Adrenal Gland Myelolipomas with Plasma Cell Neoplasms
Levy, D., Lin, C.-Y., Higgins, J. P., Kunder, C. A., & Kao, C.-S. (2017). Adrenal Gland Myelolipomas with Plasma Cell Neoplasms. LABORATORY INVESTIGATION. NATURE PUBLISHING GROUP.

Absence of Evidence Implicating Hematopoietic Stem Cells As Common Progenitors for DLBCL Mutations
Jan, M., Scherer, F., Kurtz, D. M., Newman, A. M., Stehr, H., Liu, C. L., … Alizadeh, A. A. (2016). Absence of Evidence Implicating Hematopoietic Stem Cells As Common Progenitors for DLBCL Mutations. BLOOD. AMER SOC HEMATOLOGY.

Noninvasive Detection of BCL2, BCL6, and MYC Translocations in Diffuse Large B-Cell Lymphoma
Kurtz, D. M., Scherer, F., Newman, A. M., Craig, A., Jin, M., Stehr, H., … Alizadeh, A. A. (2016). Noninvasive Detection of BCL2, BCL6, and MYC Translocations in Diffuse Large B-Cell Lymphoma. BLOOD. AMER SOC HEMATOLOGY.

The VarScan2's SNVs-Near-Indel Filter: Is It Necessary?
Suarez, C. J., Stehr, H., Fung, E., Kunder, C. A., Ewalt, M. D., Lal, A., … Zehnder, J. (2015). The VarScan2's SNVs-Near-Indel Filter: Is It Necessary? JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Circulating tumor DNA (ctDNA) in B-cell lymphoma
Scherer, F., Kurtz, D. M., Newman, A. M., Stehr, H., Craig, A. F. M., Esfahani, M. S., … Alizadeh, A. A. (2018). Circulating tumor DNA (ctDNA) in B-cell lymphoma. BRITISH JOURNAL OF HAEMATOLOGY. WILEY.

Clinical Implementation of Mutational Signature Analysis
Lawrence, L., Kunder, C., Stehr, H., & Zehnder, J. (2018). Clinical Implementation of Mutational Signature Analysis. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

A Case Report of Pediatric Clear Cell Carcinoma of the Urinary Bladder Associated With Polyomavirus
Saleem, A., Brown, R. A., Higgins, J. P. T., Troxell, M. L., Kunder, C. A., Pinsky, B. A., … Kao, C.-S. (2018). A Case Report of Pediatric Clear Cell Carcinoma of the Urinary Bladder Associated With Polyomavirus. AJSP-REVIEWS AND REPORTS, 23(6), 291–95.

Case series of MET exon 14 skipping mutation-positive non-small-cell lung cancers with response to crizotinib and cabozantinib.
Wang, S. X., Zhang, B. M., Wakelee, H. A., Koontz, M. Z., Pan, M. G., Diehn, M., … Neal, J. W. (2019). Case series of MET exon 14 skipping mutation-positive non-small-cell lung cancers with response to crizotinib and cabozantinib. Anti-Cancer Drugs.

ALK-positive Tumors are Highly Enriched in the STUMP Subgroup of Uterine Tumors
Devereaux, K., Kunder, C., & Longacre, T. (2018). ALK-positive Tumors are Highly Enriched in the STUMP Subgroup of Uterine Tumors. LABORATORY INVESTIGATION. NATURE PUBLISHING GROUP.

Validation and Application of Predicted Tumor Mutational Burden (pTMB) Using a 130-Gene Sequencing Panel in Lung Adenocarcinoma
Yang, S.-R., Steiner, D., Stehr, H., Berry, G., Zehnder, J. L., & Kunder, C. (2018). Validation and Application of Predicted Tumor Mutational Burden (pTMB) Using a 130-Gene Sequencing Panel in Lung Adenocarcinoma. LABORATORY INVESTIGATION. NATURE PUBLISHING GROUP.

Clinicopathologic Characteristics of Fumarate Hydratase-Deficient and Hereditary Leiomyomatosis and Renal Cell Carcinoma-Associated Renal Cell Carcinoma: A Series of 10 Cases
Lau, H., Williamson, S. R., Kunder, C., Fan, A. C., & Kao, C.-S. (2018). Clinicopathologic Characteristics of Fumarate Hydratase-Deficient and Hereditary Leiomyomatosis and Renal Cell Carcinoma-Associated Renal Cell Carcinoma: A Series of 10 Cases. LABORATORY INVESTIGATION. NATURE PUBLISHING GROUP.

Clinical Validation and Implementation of a Targeted Sequencing Panel for Myeloid Neoplasms
Steiner, D., Devereaux, K., Dudley, J., Jones, C., Gojenola, L., Zehnder, J., & Kunder, C. (2017). Clinical Validation and Implementation of a Targeted Sequencing Panel for Myeloid Neoplasms. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Detection of POLE Exonuclease Domain Mutations by Targeted Genomic Profiling in Hypermutated, Microsatellite Stable Colorectal Carcinoma
Steiner, D. F., Lo, A., Jones, C., Gojenola, L., Kunder, C., Zehnder, J., & Suarez, C. J. (2016). Detection of POLE Exonuclease Domain Mutations by Targeted Genomic Profiling in Hypermutated, Microsatellite Stable Colorectal Carcinoma. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Targeted Next-Generation Sequencing-Based Mutation Profiling of Fine Needle Aspiration Samples: Utility and Technical Adequacy
Lin, C., Yang, S., Costa, H. A., Weiel, J., Lo, A., Zhang, M., … Zehnder, J. (2016). Targeted Next-Generation Sequencing-Based Mutation Profiling of Fine Needle Aspiration Samples: Utility and Technical Adequacy. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Development of a Cloud-Based Comprehensive Cancer Transcriptome Profiling Pipeline for Clinical Diagnostics
Costa, H. A., Kunder, C., Zehnder, J. L., & Bustamante, C. D. (2016). Development of a Cloud-Based Comprehensive Cancer Transcriptome Profiling Pipeline for Clinical Diagnostics. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

Potential Pitfalls with TruSeq Amplicon: Cancer Panel Variant Detection
Lai, A., Kunder, C. A., Ewalt, M. D., Schrijver, I., Zehnder, J., & Suarez, C. J. (2015). Potential Pitfalls with TruSeq Amplicon: Cancer Panel Variant Detection. JOURNAL OF MOLECULAR DIAGNOSTICS. ELSEVIER SCIENCE INC.

A Case of Disseminated Pneumocystis Jiroveci in a Non-Human Immunodeficiency Virus Infected Patient
Siddiqi, A. E., Sacha, J., Saenz, R., Liu, A., Kunder, C., Uzel, G., … Gernez-Goldhammer, Y. (2019). A Case of Disseminated Pneumocystis Jiroveci in a Non-Human Immunodeficiency Virus Infected Patient. JOURNAL OF CLINICAL IMMUNOLOGY. SPRINGER/PLENUM PUBLISHERS.

Performance of multiparametric MRI appears better when measured in patients who undergo radical prostatectomy.
Wang, N. N., Fan, R. E., Leppert, J. T., Ghanouni, P., Kunder, C. A., Brooks, J. D., … Sonn, G. A. (2018). Performance of multiparametric MRI appears better when measured in patients who undergo radical prostatectomy. Research and Reports in Urology, 10, 233–235.

Mycosis fungoides presenting as symmetric concentric patches mimicking figurate erythema.
Notay, M., Petukhova, T. A., Kiuru, M., Kunder, C. A., & Hwang, S. T. (2017). Mycosis fungoides presenting as symmetric concentric patches mimicking figurate erythema. JAAD Case Reports, 3(4), 288–290.

Adrenal Myelolipomas Involved by Plasma Cell Myeloma
Lin, C.-Y., Levy, D., Higgins, J. P. T., Kunder, C. A., & Kao, C.-S. (2018). Adrenal Myelolipomas Involved by Plasma Cell Myeloma. AMERICAN JOURNAL OF CLINICAL PATHOLOGY, 150(5), 406–14.

Indolent thyroid cancer: knowns and unknowns.
Hahn, L. D., Kunder, C. A., Chen, M. M., Orloff, L. A., & Desser, T. S. (2017). Indolent thyroid cancer: knowns and unknowns. Cancers of the Head & Neck, 2, 1.

Structural. Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue
Troll, C. J., Putnam, N. H., Hartley, P. D., Rice, B., Blanchette, M., Siddiqui, S., … Costa, H. A. (2019). Structural. Variation Detection by Proximity Ligation from Formalin-Fixed, Paraffin-Embedded Tumor Tissue. JOURNAL OF MOLECULAR DIAGNOSTICS, 21(3), 375–83.

Gallium 68 PSMA-11 PET/MR Imaging in Patients with Intermediate- or High-Risk Prostate Cancer
Park, S. Y., Zacharias, C., Harrison, C., Fan, R. E., Kunder, C., Hatami, N., … Iagaru, A. (2018). Gallium 68 PSMA-11 PET/MR Imaging in Patients with Intermediate- or High-Risk Prostate Cancer. RADIOLOGY, 288(2), 495–505.

Impact of KRAS mutation subtype and concurrent pathogenic mutations on non-small cell lung cancer outcomes.
Aredo, J. V., Padda, S. K., Kunder, C. A., Han, S. S., Neal, J. W., Shrager, J. B., & Wakelee, H. A. (2019). Impact of KRAS mutation subtype and concurrent pathogenic mutations on non-small cell lung cancer outcomes. Lung Cancer (Amsterdam, Netherlands), 133, 144–50.

CD4+T Cell Predominance in T Cell/Histiocyte-Rich Large B Cell Lymphoma and Identification of a Subset of Patients With Associated B Cell Lymphopenia and Increased Circulating CD4+/CD57+T Cells
Kunder, C., Bakke, A., O'Malley, D., Venkataraman, G., & Ohgami, R. (2015). CD4+T Cell Predominance in T Cell/Histiocyte-Rich Large B Cell Lymphoma and Identification of a Subset of Patients With Associated B Cell Lymphopenia and Increased Circulating CD4+/CD57+T Cells. MODERN PATHOLOGY. NATURE PUBLISHING GROUP.

ALK-rearranged Tumors Are Highly Enriched in the STUMP Subcategory of Uterine Tumors
Devereaux, K. A., Kunder, C. A., & Longacre, T. A. (2019). ALK-rearranged Tumors Are Highly Enriched in the STUMP Subcategory of Uterine Tumors. AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 43(1), 64–74.

Noninvasive molecular subtyping and risk stratification of DLBCL.
Scherer, F., Kurtz, D. M., Newman, A. M., Stehr, H., Craig, A. F. M., Esfahani, M. S., … Alizadeh, A. A. (2016). Noninvasive molecular subtyping and risk stratification of DLBCL. JOURNAL OF CLINICAL ONCOLOGY. AMER SOC CLINICAL ONCOLOGY.

An Lkb1-Sik axis suppresses lung tumor growth and controls differentiation.
Murray, C. W., Brady, J. J., Tsai, M. K., Li, C., Winters, I. P., Tang, R., … Winslow, M. M. (2019). An Lkb1-Sik axis suppresses lung tumor growth and controls differentiation. Cancer Discovery.

Molecular profiling of clear cell adenocarcinoma of the urinary tract.
Lin, C.-Y. Y., Saleem, A., Stehr, H., Zehnder, J. L., Pinsky, B. A., & Kunder, C. A. (2019). Molecular profiling of clear cell adenocarcinoma of the urinary tract. Virchows Archiv : an International Journal of Pathology.

Next-Generation Sequencing for HER2 Status in Breast Cancer: Comparison with Immunohistochemistry and in situ Hybridization by 2018 Focused Update
Mooney, K., Stehr, H., Kunder, C., Zehnder, J., Allison, K., & Lin, C.-Y. (2019). Next-Generation Sequencing for HER2 Status in Breast Cancer: Comparison with Immunohistochemistry and in situ Hybridization by 2018 Focused Update. LABORATORY INVESTIGATION, 99.

Molecular Profiling of Intraductal Tubulopapillary Neoplasm
Saleem, A., Stehr, H., Zehnder, J., Kunder, C., & Lin, C.-Y. (2019). Molecular Profiling of Intraductal Tubulopapillary Neoplasm. MODERN PATHOLOGY, 32.

Molecular Profiling of Intraductal Tubulopapillary Neoplasm
Saleem, A., Stehr, H., Zehnder, J., Kunder, C., & Lin, C.-Y. (2019). Molecular Profiling of Intraductal Tubulopapillary Neoplasm. LABORATORY INVESTIGATION, 99.

Concordance Between Immunohistochemistry and Next Generation Sequencing in Testing Patients for Hereditary Nonpolyposis Colorectal Cancer
Lawrence, L., Longacre, T., Saleem, A., & Kunder, C. (2019). Concordance Between Immunohistochemistry and Next Generation Sequencing in Testing Patients for Hereditary Nonpolyposis Colorectal Cancer. MODERN PATHOLOGY, 32.

Framework for the co-registration of MRI and Histology Images in Prostate Cancer Patients with Radical Prostatectomy
Rusu, M., Kunder, C., Fan, R., Ghanouni, P., West, R., Sonn, G., & Brooks, J. (2019). Framework for the co-registration of MRI and Histology Images in Prostate Cancer Patients with Radical Prostatectomy. MEDICAL IMAGING 2019: IMAGE PROCESSING, 10949.

A Clinicopathologic and Molecular Analysis of Fumarate Hydratase-Deficient Renal Cell Carcinoma in 32 Patients.
Lau, H. D., Chan, E., Fan, A. C., Kunder, C. A., Williamson, S. R., Zhou, M., … Kao, C.-S. (2019). A Clinicopathologic and Molecular Analysis of Fumarate Hydratase-Deficient Renal Cell Carcinoma in 32 Patients. The American Journal of Surgical Pathology.

Evaluating Racial Differences in KRAS-Mutant Non-Small Cell Lung Cancer
Aredo, J., Padda, S., Kunder, C., Han, S., & Wakelee, H. (2019). Evaluating Racial Differences in KRAS-Mutant Non-Small Cell Lung Cancer. JOURNAL OF THORACIC ONCOLOGY. ELSEVIER SCIENCE INC.

Targeted deep sequencing of cell-free DNA in serous body cavity fluids with malignant, suspicious, and benign cytology.
Yang, S.-R., Mooney, K. L., Libiran, P., Jones, C. D., Joshi, R., Lau, H. D., … Kunder, C. A. (2019). Targeted deep sequencing of cell-free DNA in serous body cavity fluids with malignant, suspicious, and benign cytology. Cancer Cytopathology.

Increasing Clinical Trial Accrual via Automated Matching of Biomarker Criteria.
Chen, J. W., Kunder, C. A., Bui, N., Zehnder, J. L., Costa, H. A., & Stehr, H. (2020). Increasing Clinical Trial Accrual via Automated Matching of Biomarker Criteria. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 25, 31–42.

Trop2 is a driver of metastatic prostate cancer with neuroendocrine phenotype via PARP1.
Hsu, E.-C. C., Rice, M. A., Bermudez, A., Marques, F. J., Aslan, M., Liu, S., … Stoyanova, T. (2020). Trop2 is a driver of metastatic prostate cancer with neuroendocrine phenotype via PARP1. Proceedings of the National Academy of Sciences of the United States of America.

Disseminated Pneumocystis jirovecii Infection with Osteomyelitis in a Patient with CTLA-4 Haploinsufficiency.
Siddiqi, A. E., Liu, A. Y., Charville, G. W., Kunder, C. A., Uzel, G., Sadighi Akha, A. A., … Gernez, Y. (2020). Disseminated Pneumocystis jirovecii Infection with Osteomyelitis in a Patient with CTLA-4 Haploinsufficiency. Journal of Clinical Immunology.

Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma
Lawrence, L., Kunder, C., Stehr, H., Saleem, A., Natkunam, Y., Zehnder, J., … Tan, S. (2020). Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma. LABORATORY INVESTIGATION, 100(SUPPL 1), 824–26.

Correlation of Mutation Status with Immunohistochemistry in Breast Carcinomas
Bean, G., Lin, C.-Y., Kunder, C., Chen, Y.-Y., & Krings, G. (2020). Correlation of Mutation Status with Immunohistochemistry in Breast Carcinomas. LABORATORY INVESTIGATION, 100(SUPPL 1), 108–9.

Integrating genomic features for non-invasive early lung cancer detection.
Chabon, J. J., Hamilton, E. G., Kurtz, D. M., Esfahani, M. S., Moding, E. J., Stehr, H., … Diehn, M. (2020). Integrating genomic features for non-invasive early lung cancer detection. Nature, 580(7802), 245–251.

Pregnancy-associated Inflammatory Myofibroblastic Tumors of the Uterus Are Clinically Distinct and Highly Enriched for TIMP3-ALK and THBS1-ALK Fusions.
Devereaux, K. A., Fitzpatrick, M. B., Hartinger, S., Jones, C., Kunder, C. A., & Longacre, T. A. (2020). Pregnancy-associated Inflammatory Myofibroblastic Tumors of the Uterus Are Clinically Distinct and Highly Enriched for TIMP3-ALK and THBS1-ALK Fusions. The American Journal of Surgical Pathology.

Prognostic impact of KRAS mutation subtype and concurrent genetic mutations in non-small cell lung cancer.
Aredo, J., Padda, S. K., Kunder, C., Han, S. S., & Wakelee, H. A. (2018). Prognostic impact of KRAS mutation subtype and concurrent genetic mutations in non-small cell lung cancer. JOURNAL OF CLINICAL ONCOLOGY. AMER SOC CLINICAL ONCOLOGY.

Molecular profiling of a primary cutaneous signet-ring cell/histiocytoid carcinoma of the eyelid.
Raghavan, S., Clark, M., Louie, C., Jensen, K. C., Dietrich, B., Beadle, B. M., … Brown, R. A. (2020). Molecular profiling of a primary cutaneous signet-ring cell/histiocytoid carcinoma of the eyelid. Journal of Cutaneous Pathology.

Is Merkel Cell Carcinoma of Lymph Node Actually Metastatic Cutaneous Merkel Cell Carcinoma?
Lawrence, L. E., Saleem, A., Sahoo, M. K., Tan, S. K., Pinsky, B. A., Natkunam, Y., … Zehnder, J. L. (2020). Is Merkel Cell Carcinoma of Lymph Node Actually Metastatic Cutaneous Merkel Cell Carcinoma? American Journal of Clinical Pathology.

Recurrent EGFR alterations in NTRK3 fusion negative congenital mesoblastic nephroma.
Lei, L., Stohr, B. A., Berry, S., Lockwood, C. M., Davis, J. L., Rudzinski, E. R., & Kunder, C. A. (2020). Recurrent EGFR alterations in NTRK3 fusion negative congenital mesoblastic nephroma. Practical Laboratory Medicine, 21, e00164.

Registration of pre-surgical MRI and histopathology images from radical prostatectomy via RAPSODI.
Rusu, M., Shao, W., Kunder, C. A., Wang, J. B., Soerensen, S. J., Teslovich, N. C., … Sonn, G. A. (2020). Registration of pre-surgical MRI and histopathology images from radical prostatectomy via RAPSODI. Medical Physics.

Sub-solid lung adenocarcinoma in Asian versus Caucasian patients: different biology but similar outcomes.
Lui, N. S., Benson, J., He, H., Imielski, B. R., Kunder, C. A., Liou, D. Z., … Shrager, J. B. (2020). Sub-solid lung adenocarcinoma in Asian versus Caucasian patients: different biology but similar outcomes. Journal of Thoracic Disease, 12(5), 2161–2171.

Pregnancy-associated Inflammatory Myofibroblastic Tumors of the Uterus Are Clinically Distinct and Highly Enriched for TIMP3-ALK and THBS1-ALK Fusions
Devereaux, K. A., Fitzpatrick, M. B., Hartinger, S., Jones, C., Kunder, C. A., & Longacre, T. A. (2020). Pregnancy-associated Inflammatory Myofibroblastic Tumors of the Uterus Are Clinically Distinct and Highly Enriched for TIMP3-ALK and THBS1-ALK Fusions. AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 44(7), 970–81.

Inflammatory Myofibroblastic Tumors associated with the placenta, a series of 9 cases.
Makhdoum, S., Nardi, V., Devereaux, K. A., Kunder, C. A., Nielsen, G. P., Oliva, E., … Roberts, D. J. (2020). Inflammatory Myofibroblastic Tumors associated with the placenta, a series of 9 cases. Human Pathology.

Cutaneous T-cell lymphomas with pathogenic somatic mutations and absence of detectable clonal T-cell receptor gene rearrangement: two case reports.
Rojansky, R., Fernandez-Pol, S., Wang, E., Rieger, K. E., Novoa, R. A., Zehnder, J. L., … Brown, R. A. (2020). Cutaneous T-cell lymphomas with pathogenic somatic mutations and absence of detectable clonal T-cell receptor gene rearrangement: two case reports. Diagnostic Pathology, 15(1), 122.

KEAP1/NFE2L2 mutations predict lung cancer radiation resistance that can be targeted by glutaminase inhibition.
Binkley, M. S., Jeon, Y.-J. J., Nesselbush, M., Moding, E. J., Nabet, B. Y., Almanza, D., … Diehn, M. (2020). KEAP1/NFE2L2 mutations predict lung cancer radiation resistance that can be targeted by glutaminase inhibition. Cancer Discovery.

ProsRegNet: A deep learning framework for registration of MRI and histopathology images of the prostate.
Shao, W., Banh, L., Kunder, C. A., Fan, R. E., Soerensen, S. J., Wang, J. B., … Rusu, M. (2020). ProsRegNet: A deep learning framework for registration of MRI and histopathology images of the prostate. Medical Image Analysis, 68, 101919.

Neurofibrosarcoma Revisited: An Institutional Case Series of Uterine Sarcomas Harboring Kinase-related Fusions With Report of a Novel FGFR1-TACC1 Fusion.
Devereaux, K. A., Weiel, J. J., Mills, A. M., Kunder, C. A., & Longacre, T. A. (2021). Neurofibrosarcoma Revisited: An Institutional Case Series of Uterine Sarcomas Harboring Kinase-related Fusions With Report of a Novel FGFR1-TACC1 Fusion. The American Journal of Surgical Pathology.

3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction.
Sood, R. R., Shao, W., Kunder, C., Teslovich, N. C., Wang, J. B., Soerensen, S. J., … Rusu, M. (2021). 3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction. Medical Image Analysis, 69, 101957.

Performance Characteristics of Mutational Signature Analysis in Targeted Panel Sequencing.
Lawrence, L., Kunder, C. A., Fung, E., Stehr, H., & Zehnder, J. (2021). Performance Characteristics of Mutational Signature Analysis in Targeted Panel Sequencing. Archives of Pathology & Laboratory Medicine.

A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer.
Cai, H., Chew, S. K., Li, C., Tsai, M. K., Andrejka, L., Murray, C. W., … Winslow, M. M. (2021). A functional taxonomy of tumor suppression in oncogenic KRAS-driven lung cancer. Cancer Discovery.

MR method for measuring microscopic histologic soft tissue textures.
Sonn, G. A., Fan, R. E., Kunder, C. A., Gold, G. E., James, K. M., Parker, I. D., … James, T. W. (2021). MR method for measuring microscopic histologic soft tissue textures. Magnetic Resonance in Medicine.

In vivo imaging of methionine aminopeptidase II for prostate cancer risk stratification.
Xie, J., Rice, M. A., Chen, Z., Cheng, Y., Hsu, E.-C. C., Chen, M., … Rao, J. (2021). In vivo imaging of methionine aminopeptidase II for prostate cancer risk stratification. Cancer Research.

Automated Detection of Aggressive and Indolent Prostate Cancer on Magnetic Resonance Imaging.
Seetharaman, A., Bhattacharya, I., Chen, L. C., Kunder, C. A., Shao, W., Soerensen, S. J., … Rusu, M. (2021). Automated Detection of Aggressive and Indolent Prostate Cancer on Magnetic Resonance Imaging. Medical Physics.

Nodular Fasciitis of the Breast: Clinicopathologic and Molecular Analysis of 12 Cases with Identification of Novel USP6 Fusion Partners
Cloutier, J., Kunder, C., Charville, G., Hosfield, E., Sibley, R., West, R., … Bean, G. (2021). Nodular Fasciitis of the Breast: Clinicopathologic and Molecular Analysis of 12 Cases with Identification of Novel USP6 Fusion Partners. LABORATORY INVESTIGATION. SPRINGERNATURE.

Nodular fasciitis of the breast: clinicopathologic and molecular characterization with identification of novel USP6 fusion partners.
Cloutier, J. M., Kunder, C. A., Charville, G. W., Hosfield, E. M., García, J. J., Brown, R. A., … Bean, G. R. (2021). Nodular fasciitis of the breast: clinicopathologic and molecular characterization with identification of novel USP6 fusion partners. Modern Pathology : an Official Journal of the United States and Canadian Academy of Pathology, Inc.

Identification and characterization of effusion tumor cells (ETCs) from remnant pleural effusion specimens.
Zhu, Y., Allard, G. M., Ericson, N. G., George, T. C., Kunder, C. A., & Lowe, A. C. (2021). Identification and characterization of effusion tumor cells (ETCs) from remnant pleural effusion specimens. Cancer Cytopathology.

EXTERNAL VALIDATION OF AN ARTIFICIAL INTELLIGENCE ALGORITHM FOR PROSTATE CANCER GLEASON GRADING AND TUMOR QUANTIFICATION
Schmidt, B., Bhambhvani, H. P., Fan, R. E., Kunder, C., Kao, C. S., Higgins, J. P., … Sonn, G. A. (2021). EXTERNAL VALIDATION OF AN ARTIFICIAL INTELLIGENCE ALGORITHM FOR PROSTATE CANCER GLEASON GRADING AND TUMOR QUANTIFICATION. JOURNAL OF UROLOGY. LIPPINCOTT WILLIAMS & WILKINS.

Well-differentiated lipomatous neoplasms with p53 alterations: A clinicopathologic and molecular study of eight cases with features of atypical pleomorphic lipomatous tumor.
Hammer, P. M., Kunder, C. A., Howitt, B. E., & Charville, G. W. (2021). Well-differentiated lipomatous neoplasms with p53 alterations: A clinicopathologic and molecular study of eight cases with features of atypical pleomorphic lipomatous tumor. Histopathology.

Weakly Supervised Registration of Prostate MRI and Histopathology Images
Shao, W., Bhattacharya, I., Soerensen, S. J. C., Kunder, C. A., Wang, J. B., Fan, R. E., … Rusu, M. (2021). Weakly Supervised Registration of Prostate MRI and Histopathology Images. MEDICAL IMAGE COMPUTING AND COMPUTER ASSISTED INTERVENTION - MICCAI 2021, PT IV. SPRINGER INTERNATIONAL PUBLISHING AG.

Selective identification and localization of indolent and aggressive prostate cancers via CorrSigNIA: an MRI-pathology correlation and deep learning framework.
Bhattacharya, I., Seetharaman, A., Kunder, C., Shao, W., Chen, L. C., Soerensen, S. J., … Rusu, M. (2021). Selective identification and localization of indolent and aggressive prostate cancers via CorrSigNIA: an MRI-pathology correlation and deep learning framework. Medical Image Analysis, 75, 102288.

Spitz nevus with EHBP1-ALK fusion and distinctive membranous localization of ALK.
Bahrani, E., Kunder, C. A., Teng, J. M., Brown, R. A., Rieger, K. E., Novoa, R. A., & Cloutier, J. M. (1800). Spitz nevus with EHBP1-ALK fusion and distinctive membranous localization of ALK. Journal of Cutaneous Pathology.

Percent Agreement Between Immunohistochemistry and Next-Generation Sequencing in Testing Patients for Mismatch Repair Deficiency.
Lawrence, L., Longacre, T., Saleem, A., & Kunder, C. (2022). Percent Agreement Between Immunohistochemistry and Next-Generation Sequencing in Testing Patients for Mismatch Repair Deficiency. Applied Immunohistochemistry & Molecular Morphology : AIMM.

Molecular Characterization of Urachal Neoplasms
Khan, O., Kunder, C., Kao, C.-S. S., & Sangoi, A. (2022). Molecular Characterization of Urachal Neoplasms. MODERN PATHOLOGY. SPRINGERNATURE.

Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities.
Yousefi, M., Boross, G., Weiss, C., Murray, C. W., Hebert, J. D., Cai, H., … Winslow, M. M. (2022). Combinatorial Inactivation of Tumor Suppressors Efficiently Initiates Lung Adenocarcinoma with Therapeutic Vulnerabilities. Cancer Research, 82(8), 1589–1602.

Correlation of 68Ga-RM2 PET with Post-Surgery Histopathology Findings in Patients with Newly Diagnosed Intermediate- or High-Risk Prostate Cancer.
Duan, H., Baratto, L., Fan, R. E., Soerensen, S. J., Liang, T., Chung, B. I., … Iagaru, A. (2022). Correlation of 68Ga-RM2 PET with Post-Surgery Histopathology Findings in Patients with Newly Diagnosed Intermediate- or High-Risk Prostate Cancer. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine.

Bridging the gap between prostate radiology and pathology through machine learning.
Bhattacharya, I., Lim, D. S., Aung, H. L., Liu, X., Seetharaman, A., Kunder, C. A., … Rusu, M. (2022). Bridging the gap between prostate radiology and pathology through machine learning. Medical Physics.

GRM1 Immunohistochemistry Distinguishes Chondromyxoid Fibroma From its Histologic Mimics.
Toland, A. M., Lam, S. W., Varma, S., Wang, A., Howitt, B. E., Kunder, C. A., … Charville, G. W. (2022). GRM1 Immunohistochemistry Distinguishes Chondromyxoid Fibroma From its Histologic Mimics. The American Journal of Surgical Pathology.

The genetic landscape of germline DDX41 variants predisposing to myeloid neoplasms.
Li, P., Brown, S., Williams, M., White, T. A., Xie, W., Cui, W., … Patel, J. L. (2022). The genetic landscape of germline DDX41 variants predisposing to myeloid neoplasms. Blood.

Immunofluorescent and molecular characterization of effusion tumor cells reveal cancer site-of-origin and disease-driving mutations
Zhu, Y., Wang, A., Allard, G. M., Nordberg, J. J., Nair, R. V., Kunder, C. A., & Lowe, A. C. (2022). Immunofluorescent and molecular characterization of effusion tumor cells reveal cancer site-of-origin and disease-driving mutations. Cancer Cytopathology.

Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning.
Moroianu, S. L., Bhattacharya, I., Seetharaman, A., Shao, W., Kunder, C. A., Sharma, A., … Rusu, M. (2022). Computational Detection of Extraprostatic Extension of Prostate Cancer on Multiparametric MRI Using Deep Learning. Cancers, 14(12).

Integrating zonal priors and pathomic MRI biomarkers for improved aggressive prostate cancer detection on MRI
Bhattacharya, I., Shao, W., Soerensen, S. J. C., Fan, R. E., Wang, J. B., Kunder, C., … Rusu, M. (2022). Integrating zonal priors and pathomic MRI biomarkers for improved aggressive prostate cancer detection on MRI. MEDICAL IMAGING 2022: COMPUTER-AIDED DIAGNOSIS. SPIE-INT SOC OPTICAL ENGINEERING.

A review of artificial intelligence in prostate cancer detection on imaging.
Bhattacharya, I., Khandwala, Y. S., Vesal, S., Shao, W., Yang, Q., Soerensen, S. J., … Sonn, G. A. (2022). A review of artificial intelligence in prostate cancer detection on imaging. Therapeutic Advances in Urology, 14, 17562872221128791.

A Pilot Study of 68Ga-PSMA11 and 68Ga-RM2 PET/MRI for Evaluation of Prostate Cancer Response to High Intensity Focused Ultrasound (HIFU) Therapy.
Duan, H., Ghanouni, P., Daniel, B., Rosenberg, J., Davidzon, G. A., Mari Aparici, C., … Iagaru, A. (2022). A Pilot Study of 68Ga-PSMA11 and 68Ga-RM2 PET/MRI for Evaluation of Prostate Cancer Response to High Intensity Focused Ultrasound (HIFU) Therapy. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine.

Analysis of circulating tumor DNA in the phase 2 BTCRC LUN 16-081 trial of consolidation nivolumab with or without ipilimumab after chemoradiation in stage III non-small cell lung cancer.
Jun, S., Shukla, N., Durm, G. A., Hui, A. B., Cao, S., Kunder, C., … Diehn, M. (2022). Analysis of circulating tumor DNA in the phase 2 BTCRC LUN 16-081 trial of consolidation nivolumab with or without ipilimumab after chemoradiation in stage III non-small cell lung cancer. JOURNAL OF CLINICAL ONCOLOGY. LIPPINCOTT WILLIAMS & WILKINS.

A Pilot Study of 68Ga-PSMA11 and 68Ga-RM2 PET/MRI for Biopsy Guidance in Patients with Suspected Prostate Cancer.
Duan, H., Ghanouni, P., Daniel, B., Rosenberg, J., Thong, A., Kunder, C., … Iagaru, A. (2022). A Pilot Study of 68Ga-PSMA11 and 68Ga-RM2 PET/MRI for Biopsy Guidance in Patients with Suspected Prostate Cancer. Journal of Nuclear Medicine : Official Publication, Society of Nuclear Medicine.

S1P-Dependent Trafficking of Intracellular Yersinia pestis through Lymph Nodes Establishes Buboes and Systemic Infection
St John, A. L., Ang, W. X. G., Huang, M.-N., Kunder, C. A., Chan, E. W., Gunn, M. D., & Abraham, S. N. (2014). S1P-Dependent Trafficking of Intracellular Yersinia pestis through Lymph Nodes Establishes Buboes and Systemic Infection. IMMUNITY, 41(3), 440–450.

Diagnosis of Anal Intraepithelial Neoplasia: Impact of the 2012 LAST Guidelines
Matsukuma, K., Louie, C., Carrigg, A., Di Maio, M. A., Fujiwara, M., Kunder, C., … Kong, C. (2014). Diagnosis of Anal Intraepithelial Neoplasia: Impact of the 2012 LAST Guidelines. MODERN PATHOLOGY. NATURE PUBLISHING GROUP.

Temporal co-option of host cell trafficking by Yersinia pestis during bubonic plague
Ang, W. X. G., St John, A., Kunder, C., Chan, E., Gunn, M., & Abraham, S. (2013). Temporal co-option of host cell trafficking by Yersinia pestis during bubonic plague. JOURNAL OF IMMUNOLOGY. AMER ASSOC IMMUNOLOGISTS.

Mast cell modulation of the vascular and lymphatic endothelium
Kunder, C. A., St John, A. L., & Abraham-, S. N. (2011). Mast cell modulation of the vascular and lymphatic endothelium. BLOOD, 118(20), 5383–5393.

Mast cell-derived particles deliver peripheral signals to remote lymph nodes
Kunder, C. A., John, A. L. S., Li, G., Leong, K. W., Berwin, B., Staats, H. F., & Abraham, S. N. (2009). Mast cell-derived particles deliver peripheral signals to remote lymph nodes. JOURNAL OF EXPERIMENTAL MEDICINE, 206(11), 2455–2467.