Copy number variation prevalence in known asthma genes and their impact on asthma susceptibility
Rogers, A. J., Chu, J.-H., Darvishi, K., Ionita-Laza, I., Lehmann, H., Mills, R., … Raby, B. A. (2013). Copy number variation prevalence in known asthma genes and their impact on asthma susceptibility. CLINICAL AND EXPERIMENTAL ALLERGY, 43(4), 455–462.

The interaction of glutathione S-transferase M1-null variants with tobacco smoke exposure and the development of childhood asthma
Rogers, A. J., Brasch-Andersen, C., Ionita-Laza, I., Murphy, A., Sharma, S., Klanderman, B. J., & Raby, B. A. (2009). The interaction of glutathione S-transferase M1-null variants with tobacco smoke exposure and the development of childhood asthma. CLINICAL AND EXPERIMENTAL ALLERGY, 39(11), 1721–1729.

Filaggrin mutations confer susceptibility to atopic dermatitis but not to asthma
Rogers, A. J., Celedon, J. C., Lasky-Su, J. A., Weiss, S. T., & Raby, B. A. (2007). Filaggrin mutations confer susceptibility to atopic dermatitis but not to asthma. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 120(6), 1332–1337.

Assessing the Reproducibility of Asthma Candidate Gene Associations, Using Genome-wide Data
Rogers, A. J., Raby, B. A., Lasky-Su, J. A., Murphy, A., Lazarus, R., Klanderman, B. J., … Weiss, S. T. (2009). Assessing the Reproducibility of Asthma Candidate Gene Associations, Using Genome-wide Data. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 179(12), 1084–1090.

Copy number variation genotyping using family information
Chu, J.-hwa, Rogers, A., Ionita-Laza, I., Darvishi, K., Mills, R. E., Lee, C., & Raby, B. A. (2013). Copy number variation genotyping using family information. BMC BIOINFORMATICS, 14.

Inflammasome-regulated Cytokines Are Critical Mediators of Acute Lung Injury
Dolinay, T., Kim, Y. S., Howrylak, J., Hunninghake, G. M., An, C. H., Fredenburgh, L., … Choi, A. M. K. (2012). Inflammasome-regulated Cytokines Are Critical Mediators of Acute Lung Injury. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 185(11), 1225–1234.

A Role for Wnt Signaling Genes in the Pathogenesis of Impaired Lung Function in Asthma
Sharma, S., Tantisira, K., Carey, V., Murphy, A. J., Lasky-Su, J., Celedon, J. C., … Weiss, S. T. (2010). A Role for Wnt Signaling Genes in the Pathogenesis of Impaired Lung Function in Asthma. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 181(4), 328–336.

Predictors of poor response during asthma therapy differ with definition of outcome
Rogers, A. J., Tantisira, K. G., Fuhlbrigge, A. L., Litonjua, A. A., Lasky-Su, J. A., Szefler, S. J., … Weiss, S. T. (2009). Predictors of poor response during asthma therapy differ with definition of outcome. PHARMACOGENOMICS, 10(8), 1231–1242.

Asthma genetics and genomics 2009
Weiss, S. T., Raby, B. A., & Rogers, A. (2009). Asthma genetics and genomics 2009. CURRENT OPINION IN GENETICS & DEVELOPMENT, 19(3), 279–282.

On the Genome-Wide Analysis of Copy Number Variants in Family-Based Designs: Methods for Combining Family-Based and Population-Based Information for Testing Dichotomous or Quantitative Traits, or Completely Ascertained Samples
Murphy, A., Won, S., Rogers, A., Chu, J.-H., Raby, B. A., & Lange, C. (2010). On the Genome-Wide Analysis of Copy Number Variants in Family-Based Designs: Methods for Combining Family-Based and Population-Based Information for Testing Dichotomous or Quantitative Traits, or Completely Ascertained Samples. GENETIC EPIDEMIOLOGY, 34(6), 582–590.

Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis
Ionita-Laza, I., Rogers, A. J., Lange, C., Raby, B. A., & Lee, C. (2009). Genetic association analysis of copy-number variation (CNV) in human disease pathogenesis. GENOMICS, 93(1), 22–26.

The CD4+ T-cell transcriptome and serum IgE in asthma: IL17RB and the role of sex.
Hunninghake, G. M., Chu, J.-H., Sharma, S. S., Cho, M. H., Himes, B. E., Rogers, A. J., … Raby, B. A. (2011). The CD4+ T-cell transcriptome and serum IgE in asthma: IL17RB and the role of sex. BMC Pulmonary Medicine, 11, 17-?

Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis.
Qiu, W., Rogers, A. J., Damask, A., Raby, B. A., Klanderman, B. J., Duan, Q. L., … Tantisira, K. G. (2014). Pharmacogenomics: novel loci identification via integrating gene differential analysis and eQTL analysis. Human Molecular Genetics, 23(18), 5017–24.

Applying metabolomics to uncover novel biology in ARDS.
Rogers, A. J., & Matthay, M. A. (2014). Applying metabolomics to uncover novel biology in ARDS. American Journal of Physiology. Lung Cellular and Molecular Physiology, 306(11), L957–61.

Factors associated with bronchiolitis obliterans syndrome and chronic graft-versus-host disease after allogeneic hematopoietic cell transplantation
Gazourian, L., Rogers, A. J., Ibanga, R., Weinhouse, G. L., Pinto-Plata, V., Ritz, J., … Ho, V. T. (2014). Factors associated with bronchiolitis obliterans syndrome and chronic graft-versus-host disease after allogeneic hematopoietic cell transplantation. AMERICAN JOURNAL OF HEMATOLOGY, 89(4), 404–9.

Integrative "omic" analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes.
Langley, R. J., Tipper, J. L., Bruse, S., Baron, R. M., Tsalik, E. L., Huntley, J., … Harrod, K. S. (2014). Integrative "omic" analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes. American Journal of Respiratory and Critical Care Medicine, 190(4), 445–455.

Design and implementation of the START (STem cells for ARDS Treatment) trial, a phase 1/2 trial of human mesenchymal stem/stromal cells for the treatment of moderate-severe acute respiratory distress syndrome
Liu, K. D., Wilson, J. G., Zhuo, H., Caballero, L., McMillan, M. L., Fang, X., … Matthay, M. A. (2014). Design and implementation of the START (STem cells for ARDS Treatment) trial, a phase 1/2 trial of human mesenchymal stem/stromal cells for the treatment of moderate-severe acute respiratory distress syndrome. ANNALS OF INTENSIVE CARE, 4.

Mesenchymal stem (stromal) cells for treatment of ARDS: a phase 1 clinical trial.
Wilson, J. G., Liu, K. D., Zhuo, H., Caballero, L., McMillan, M., Fang, X., … Matthay, M. A. (2015). Mesenchymal stem (stromal) cells for treatment of ARDS: a phase 1 clinical trial. The Lancet. Respiratory Medicine, 3(1), 24–32.

Finding an early warning signal for acute respiratory distress syndrome: are we getting closer?
Rogers, A. J., & Dhillon, G. S. (2015). Finding an early warning signal for acute respiratory distress syndrome: are we getting closer? Critical Care Medicine, 43(3), 721–22.

Increased expression of neutrophil-related genes in patients with early sepsis-induced ARDS
Kangelaris, K. N., Prakash, A., Liu, K. D., Aouizerat, B., Woodruff, P. G., Erle, D. J., … Calfee, C. S. (2015). Increased expression of neutrophil-related genes in patients with early sepsis-induced ARDS. AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY, 308(11), L1102–L1113.

Design and implementation of the START (STem cells for ARDS Treatment) trial, a phase 1/2 trial of human mesenchymal stem/stromal cells for the treatment of moderate-severe acute respiratory distress syndrome.
Liu, K. D., Wilson, J. G., Zhuo, H., Caballero, L., McMillan, M. L., Fang, X., … Matthay, M. A. (2014). Design and implementation of the START (STem cells for ARDS Treatment) trial, a phase 1/2 trial of human mesenchymal stem/stromal cells for the treatment of moderate-severe acute respiratory distress syndrome. Annals of Intensive Care, 4, 22-?

Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation.
Croteau-Chonka, D. C., Rogers, A. J., Raj, T., McGeachie, M. J., Qiu, W., Ziniti, J. P., … Raby, B. A. (2015). Expression Quantitative Trait Loci Information Improves Predictive Modeling of Disease Relevance of Non-Coding Genetic Variation. PloS One, 10(10).

A resident-created hospitalist curriculum for internal medicine housestaff.
Kumar, A., Smeraglio, A., Witteles, R., Harman, S., Nallamshetty, S., Rogers, A., … Ahuja, N. (2016). A resident-created hospitalist curriculum for internal medicine housestaff. Journal of Hospital Medicine, 11(9), 646–49.

Metabolites Associated With Malnutrition in the Intensive Care Unit Are Also Associated With 28-Day Mortality: A Prospective Cohort Study.
Mogensen, K. M., Lasky-Su, J., Rogers, A. J., Baron, R. M., Fredenburgh, L. E., Rawn, J., … Christopher, K. B. (2016). Metabolites Associated With Malnutrition in the Intensive Care Unit Are Also Associated With 28-Day Mortality: A Prospective Cohort Study. JPEN. Journal of Parenteral and Enteral Nutrition.

Metabolism, Metabolomics, and Nutritional Support of Patients with Sepsis
Englert, J. A., & Rogers, A. J. (2016). Metabolism, Metabolomics, and Nutritional Support of Patients with Sepsis. CLINICS IN CHEST MEDICINE, 37(2), 321-?

Proteomic study of acute respiratory distress syndrome: current knowledge and implications for drug development
Levitt, J. E., & Rogers, A. J. (2016). Proteomic study of acute respiratory distress syndrome: current knowledge and implications for drug development. EXPERT REVIEW OF PROTEOMICS, 13(5), 457–69.

ATS Core Curriculum 2016: Part II. Adult Critical Care Medicine.
McSparron, J. I., Hayes, M. M., Poston, J. T., Thomson, C. C., Fessler, H. E., Stapleton, R. D., … Luks, A. M. (2016). ATS Core Curriculum 2016: Part II. Adult Critical Care Medicine. Annals of the American Thoracic Society, 13(5), 731–40.

A computational approach to mortality prediction of alcohol use disorder inpatients
Calvert, J., Mao, Q., Rogers, A. J., Barton, C., Jay, M., Desautels, T., … Das, R. (2016). A computational approach to mortality prediction of alcohol use disorder inpatients. COMPUTERS IN BIOLOGY AND MEDICINE, 75, 74–79.

Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury.
Sweeney, T. E., Lofgren, S., Khatri, P., & Rogers, A. J. (2017). Gene Expression Analysis to Assess the Relevance of Rodent Models to Human Lung Injury. American Journal of Respiratory Cell and Molecular Biology.

Profiling of ARDS Pulmonary Edema Fluid Identifies a Metabolically Distinct Subset.
Rogers, A. J., Contrepois, K., Wu, M., Zheng, M., Peltz, G., Ware, L. B., & Matthay, M. A. (2017). Profiling of ARDS Pulmonary Edema Fluid Identifies a Metabolically Distinct Subset. American Journal of Physiology. Lung Cellular and Molecular Physiology, ajplung 00438 2016-?

Metabolome alterations in severe critical illness and vitamin D status.
Lasky-Su, J., Dahlin, A., Litonjua, A. A., Rogers, A. J., McGeachie, M. J., Baron, R. M., … Christopher, K. B. (2017). Metabolome alterations in severe critical illness and vitamin D status. Critical Care (London, England), 21(1), 193.

Multicohort Analysis of Whole-Blood Gene Expression Data Does Not Form a Robust Diagnostic for Acute Respiratory Distress Syndrome.
Sweeney, T. E., Thomas, N. J., Howrylak, J. A., Wong, H. R., Rogers, A. J., & Khatri, P. (2018). Multicohort Analysis of Whole-Blood Gene Expression Data Does Not Form a Robust Diagnostic for Acute Respiratory Distress Syndrome. Critical Care Medicine, 46(2), 244–51.

New Strategies and Challenges in Lung Proteomics and Metabolomics. An Official American Thoracic Society Workshop Report.
Bowler, R. P., Wendt, C. H., Fessler, M. B., Foster, M. W., Kelly, R. S., Lasky-Su, J., … Winston, B. W. (2017). New Strategies and Challenges in Lung Proteomics and Metabolomics. An Official American Thoracic Society Workshop Report. Annals of the American Thoracic Society, 14(12), 1721–1743.

GWAS in ARDS: Finding the Needle in the Haystack to Advance our Understanding of ARDS.
Rogers, A. J. (2018). GWAS in ARDS: Finding the Needle in the Haystack to Advance our Understanding of ARDS. American Journal of Respiratory and Critical Care Medicine.

16 Years and Counting? Time to Implement Noninvasive Screening for ARDS
Rogers, A. J., & Liu, V. X. (2016). 16 Years and Counting? Time to Implement Noninvasive Screening for ARDS. CHEST, 150(2), 266–67.

A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data
Pandey, G., Pandey, O. P., Rogers, A. J., Ahsen, M. E., Hoffman, G. E., Raby, B. A., … Bunyavanich, S. (2018). A Nasal Brush-based Classifier of Asthma Identified by Machine Learning Analysis of Nasal RNA Sequence Data. SCIENTIFIC REPORTS, 8, 8826.

VITAMIN C AND METABOLOME ALTERATIONS IN SEVERE CRITICAL ILLNESS
Golmai, P., Rogers, A., Baron, R., Gazourian, L., Chary, S., Fredenburgh, L., … Christopher, K. (2018). VITAMIN C AND METABOLOME ALTERATIONS IN SEVERE CRITICAL ILLNESS. CRITICAL CARE MEDICINE, 46(1), 712.

MUC5B Promoter Polymorphism and Development of ARDS.
Rogers, A. J., Solus, J. F., Hunninghake, G. M., Baron, R. M., Meyer, N. J., Janz, D. R., … Ware, L. B. (2018). MUC5B Promoter Polymorphism and Development of ARDS. American Journal of Respiratory and Critical Care Medicine.

Epidemiologic and Population Genetic Studies
Rogers, A. J., & Weiss, S. T. (2017). Epidemiologic and Population Genetic Studies. CLINICAL AND TRANSLATIONAL SCIENCE: PRINCIPLES OF HUMAN RESEARCH, 2ND EDITION, 313–26.

METABOLOME ALTERATION IN CRITICAL ILLNESS ACCORDING TO VITAMIN D STATUS: A PROSPECTIVE COHORT STUDY
Christopher, K., Rogers, A., Baron, R., Fredenburgh, L., Gazourian, L., Massaro, A., … Litonjua, A. (2014). METABOLOME ALTERATION IN CRITICAL ILLNESS ACCORDING TO VITAMIN D STATUS: A PROSPECTIVE COHORT STUDY. CRITICAL CARE MEDICINE, 42(12).

Treatment with allogeneic mesenchymal stromal cells for moderate to severe acute respiratory distress syndrome (START study): a randomised phase 2a safety trial.
Matthay, M. A., Calfee, C. S., Zhuo, H., Thompson, B. T., Wilson, J. G., Levitt, J. E., … Liu, K. D. (2018). Treatment with allogeneic mesenchymal stromal cells for moderate to severe acute respiratory distress syndrome (START study): a randomised phase 2a safety trial. The Lancet. Respiratory Medicine.

Current Status and Future Opportunities in Lung Precision Medicine Research with a Focus on Biomarkers
Wu, A. C., Kiley, J. P., Noel, P. J., Amur, S., Burchard, E. G., Clancy, J. P., … Himes, B. E. (2018). Current Status and Future Opportunities in Lung Precision Medicine Research with a Focus on Biomarkers. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 198(12), 1479–89.

Plasma mitochondrial DNA and metabolomic alterations in severe critical illness.
Johansson, P. I., Nakahira, K., Rogers, A. J., McGeachie, M. J., Baron, R. M., Fredenburgh, L. E., … Christopher, K. B. (2018). Plasma mitochondrial DNA and metabolomic alterations in severe critical illness. Critical Care (London, England), 22(1), 360.

Treatment with allogeneic mesenchymal stromal cells for moderate to severe acute respiratory distress syndrome (START study): a randomised phase 2a safety trial
Matthay, M. A., Calfee, C. S., Zhuo, H., Thompson, B. T., Wilson, J. G., Levitt, J. E., … Liu, K. D. (2019). Treatment with allogeneic mesenchymal stromal cells for moderate to severe acute respiratory distress syndrome (START study): a randomised phase 2a safety trial. LANCET RESPIRATORY MEDICINE, 7(2), 154–62.

Association of Elevated Plasma Interleukin 18 Level With Increased Mortality in a Clinical Trial of Statin Treatment for Acute Respiratory Distress Syndrome.
Rogers, A. J., Guan, J., Trtchounian, A., Hunninghake, G. M., Kaimal, R., Desai, M., … Baron, R. M. (2019). Association of Elevated Plasma Interleukin 18 Level With Increased Mortality in a Clinical Trial of Statin Treatment for Acute Respiratory Distress Syndrome. Critical Care Medicine.

Genome-Wide Association Study in Acute Respiratory Distress Syndrome Finding the Needle in the Haystack to Advance Our Understanding of Acute Respiratory Distress Syndrome
Rogers, A. J. (2018). Genome-Wide Association Study in Acute Respiratory Distress Syndrome Finding the Needle in the Haystack to Advance Our Understanding of Acute Respiratory Distress Syndrome. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 197(11), 1373–74.

Semi-quantitative visual assessment of chest radiography is associated with clinical outcomes in critically ill patients.
Mason, S. E., Dieffenbach, P. B., Englert, J. A., Rogers, A. A., Massaro, A. F., Fredenburgh, L. E., … Ash, S. Y. (2019). Semi-quantitative visual assessment of chest radiography is associated with clinical outcomes in critically ill patients. Respiratory Research, 20(1), 218.

The authors reply.
Rogers, A. J., Desai, M., Matthay, M. A., Choi, A. M., & Baron, R. M. (2020). The authors reply. Critical Care Medicine, 48(1), e78.

Early High-Dose Vitamin D3 for Critically Ill, Vitamin D-Deficient Patients.
Ginde, A. A., Brower, R. G., Caterino, J. M., Finck, L., Banner-Goodspeed, V. M., Grissom, C. K., … Talmor, D. (2019). Early High-Dose Vitamin D3 for Critically Ill, Vitamin D-Deficient Patients. The New England Journal of Medicine.

Gender Differences in Authorship of Critical Care Literature.
Vranas, K. C., Ouyang, D., Lin, A. L., Slatore, C. G., Sullivan, D. R., Prasad Kerlin, M., … Rogers, A. J. (2020). Gender Differences in Authorship of Critical Care Literature. American Journal of Respiratory and Critical Care Medicine.

Association Between Peripheral Blood Oxygen Saturation (SpO2)/Fraction of Inspired Oxygen (FiO2) Ratio Time at Risk and Hospital Mortality in Mechanically Ventilated Patients.
Adams, J. Y., Rogers, A. J., Schuler, A., Marelich, G. P., Fresco, J. M., Taylor, S. L., … Liu, V. X. (2020). Association Between Peripheral Blood Oxygen Saturation (SpO2)/Fraction of Inspired Oxygen (FiO2) Ratio Time at Risk and Hospital Mortality in Mechanically Ventilated Patients. The Permanente Journal, 24.

A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections.
Mayhew, M. B., Buturovic, L., Luethy, R., Midic, U., Moore, A. R., Roque, J. A., … Sweeney, T. E. (2020). A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections. Nature Communications, 11(1), 1177.

Plasma mitochondrial DNA and metabolomic alterations in severe critical illness
Johansson, P. I., Nakahira, K., Rogers, A. J., McGeachie, M. J., Baron, R. M., Fredenburgh, L. E., … Christopher, K. B. (2018). Plasma mitochondrial DNA and metabolomic alterations in severe critical illness. CRITICAL CARE, 22.

A single-cell atlas of the peripheral immune response in patients with severe COVID-19.
Wilk, A. J., Rustagi, A., Zhao, N. Q., Roque, J., Martinez-Colon, G. J., McKechnie, J. L., … Blish, C. A. (2020). A single-cell atlas of the peripheral immune response in patients with severe COVID-19. Nature Medicine.

Characteristics and Outcomes of Coronavirus Disease Patients under Nonsurge Conditions, Northern California, USA, March-April 2020.
Ferguson, J., Rosser, J. I., Quintero, O., Scott, J., Subramanian, A., Gumma, M., … Kappagoda, S. (2020). Characteristics and Outcomes of Coronavirus Disease Patients under Nonsurge Conditions, Northern California, USA, March-April 2020. Emerging Infectious Diseases, 26(8).

Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis.
Wilson, J. G., Simpson, L. J., Ferreira, A.-M., Rustagi, A., Roque, J. A., Asuni, A., … Rogers, A. J. (2020). Cytokine profile in plasma of severe COVID-19 does not differ from ARDS and sepsis. JCI Insight.

Electrical Storm in COVID-19.
O'Brien, C., Ning, N., McAvoy, J., Mitchell, J. E., Kalwani, N., Wang, P., … Lorenzo, J. (2020). Electrical Storm in COVID-19. JACC. Case Reports, 2(9), 1256–60.

Network study of nasal transcriptome profiles reveals master regulator genes of asthma.
Do, A. N., Chun, Y., Grishina, G., Grishin, A., Rogers, A. J., Raby, B. A., … Bunyavanich, S. (2020). Network study of nasal transcriptome profiles reveals master regulator genes of asthma. The Journal of Allergy and Clinical Immunology.

Delving beneath the surface of hyperinflammation in COVID-19.
Reddy, K., Rogers, A. J., & McAuley, D. F. (2020). Delving beneath the surface of hyperinflammation in COVID-19. The Lancet Rheumatology.

Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2.
Nielsen, S. C., Yang, F., Jackson, K. J., Hoh, R. A., Röltgen, K., Jean, G. H., … Boyd, S. D. (2020). Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2. Cell Host & Microbe.

Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome.
Röltgen, K., Powell, A. E., Wirz, O. F., Stevens, B. A., Hogan, C. A., Najeeb, J., … Boyd, S. D. (2020). Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome. Science Immunology, 5(54).

Prolonged Hospitalization Following Acute Respiratory Failure.
Marmor, M., Liu, S., Long, J., Chertow, G. M., & Rogers, A. J. (2020). Prolonged Hospitalization Following Acute Respiratory Failure. Chest.

The ARREST Pneumonia (Arrest Respiratory Failure due to Pneumonia) Trial: Rationale and Design.
Levitt, J. E., Festic, E., Desai, M., Hedlin, H., Mahaffey, K. W., Rogers, A. J., … Matthay, M. A. (2021). The ARREST Pneumonia (Arrest Respiratory Failure due to Pneumonia) Trial: Rationale and Design. Annals of the American Thoracic Society.

SARS-CoV-2 RNAemia predicts clinical deterioration and extrapulmonary complications from COVID-19.
Ram-Mohan, N., Kim, D., Zudock, E. J., Hashemi, M. M., Tjandra, K. C., Rogers, A. J., … Yang, S. (2021). SARS-CoV-2 RNAemia predicts clinical deterioration and extrapulmonary complications from COVID-19. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19
Delaveris, C. S., Wilk, A. J., Riley, N. M., Stark, J. C., Yang, S. S., Rogers, A. J., … Bertozzi, C. R. (2021). Synthetic Siglec-9 Agonists Inhibit Neutrophil Activation Associated with COVID-19. ACS CENTRAL SCIENCE, 7(4), 650–657.

Integrated analysis of multimodal single-cell data.
Hao, Y., Hao, S., Andersen-Nissen, E., Mauck, W. M., Zheng, S., Butler, A., … Satija, R. (2021). Integrated analysis of multimodal single-cell data. Cell.

Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19.
Wilk, A. J., Lee, M. J., Wei, B., Parks, B., Pi, R., Martinez-Colon, G. J., … Blish, C. A. (2021). Multi-omic profiling reveals widespread dysregulation of innate immunity and hematopoiesis in COVID-19. The Journal of Experimental Medicine, 218(8).

Prospective validation of an 11-gene mRNA host response score for mortality risk stratification in the intensive care unit.
Moore, A. R., Roque, J., Shaller, B. T., Asuni, T., Remmel, M., Rawling, D., … Rogers, A. J. (2021). Prospective validation of an 11-gene mRNA host response score for mortality risk stratification in the intensive care unit. Scientific Reports, 11(1), 13062.

The COVID-19 Outpatient Pragmatic Platform Study (COPPS): Study design of a multi-center pragmatic platform trial.
Bunning, B., Hedlin, H., Purington, N., Sundaram, V., Kapphahn, K., Weng, Y., … Desai, M. (2021). The COVID-19 Outpatient Pragmatic Platform Study (COPPS): Study design of a multi-center pragmatic platform trial. Contemporary Clinical Trials, 106509.

Effect of Hydroxychloroquine on Clinical Status at 14 Days in Hospitalized Patients With COVID-19: A Randomized Clinical Trial.
Self, W. H., Semler, M. W., Leither, L. M., Casey, J. D., Angus, D. C., Brower, R. G., … Diercks, D. (2020). Effect of Hydroxychloroquine on Clinical Status at 14 Days in Hospitalized Patients With COVID-19: A Randomized Clinical Trial. JAMA, 324(21), 2165–2176.

A Neutralizing Monoclonal Antibody for Hospitalized Patients with Covid-19.
Lundgren, J. D., Grund, B., Barkauskas, C. E., Holland, T. L., Gottlieb, R. L., Sandkovsky, U., … Neaton, J. D. (2021). A Neutralizing Monoclonal Antibody for Hospitalized Patients with Covid-19. The New England Journal of Medicine, 384(10), 905–914.

What Does "ARDS" Mean during the COVID-19 Pandemic?
Brown, S. M., Peltan, I. D., Barkauskas, C., Rogers, A. J., Kan, V., Gelijns, A., & Thompson, B. T. (2021). What Does "ARDS" Mean during the COVID-19 Pandemic? Annals of the American Thoracic Society.

Plasma Metabolites in Early Sepsis Identify Distinct Clusters Defined by Plasma Lipids.
Rogers, A. J., Leligdowicz, A., Contrepois, K., Jauregui, A., Vessel, K., Deiss, T. J., … Matthay, M. A. (2021). Plasma Metabolites in Early Sepsis Identify Distinct Clusters Defined by Plasma Lipids. Critical Care Explorations, 3(8), e0478.

Therapeutic Anticoagulation with Heparin in Critically Ill Patients with Covid-19.
Goligher, E. C., Bradbury, C. A., McVerry, B. J., Lawler, P. R., Berger, J. S., Gong, M. N., … Zhong, Y. (2021). Therapeutic Anticoagulation with Heparin in Critically Ill Patients with Covid-19. The New England Journal of Medicine.

Therapeutic Anticoagulation with Heparin in Noncritically Ill Patients with Covid-19.
Lawler, P. R., Goligher, E. C., Berger, J. S., Neal, M. D., McVerry, B. J., Nicolau, J. C., … Zampieri, F. G. (2021). Therapeutic Anticoagulation with Heparin in Noncritically Ill Patients with Covid-19. The New England Journal of Medicine.

A Perspective on the Role of Point-of-Care "Immuno-Triaging" to Optimize COVID-19 Vaccination Distribution in a Time of Scarcity.
Zhang, Y., Rogers, A., Nadeau, K., Gu, J., & Yang, S. (2021). A Perspective on the Role of Point-of-Care "Immuno-Triaging" to Optimize COVID-19 Vaccination Distribution in a Time of Scarcity. Frontiers in Public Health, 9, 638316.

Effect of Simvastatin on Mortality in ARDS Patients with Low Cholesterol: A Secondary Analysis of the HARP-2 Trial
Pienkos, S., Moore, A. R., Guan, J., Levitt, J. E., Matthay, M. A., Choi, A. M., … Rogers, A. J. (2021). Effect of Simvastatin on Mortality in ARDS Patients with Low Cholesterol: A Secondary Analysis of the HARP-2 Trial. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. AMER THORACIC SOC.

Active surveillance of serious adverse events following transfusion of COVID-19 convalescent plasma.
Swenson, E., Wong, L. K., Jhaveri, P., Weng, Y., Kappagoda, S., Pandey, S., … Hollenhorst, M. (2021). Active surveillance of serious adverse events following transfusion of COVID-19 convalescent plasma. Transfusion.

Association Between SARS-CoV-2 RNAemia and Postacute Sequelae of COVID-19.
Ram-Mohan, N., Kim, D., Rogers, A. J., Blish, C. A., Nadeau, K. C., Blomkalns, A. L., & Yang, S. (2022). Association Between SARS-CoV-2 RNAemia and Postacute Sequelae of COVID-19. Open Forum Infectious Diseases, 9(2), ofab646.

Influence of the COVID-19 Pandemic on Author Gender and Manuscript Acceptance Rates among Pulmonary and Critical Care Journals.
Gershengorn, H. B., Vranas, K. C., Ouyang, D., Cheng, S., Rogers, A. J., Schweiger, L., … Slatore, C. G. (2022). Influence of the COVID-19 Pandemic on Author Gender and Manuscript Acceptance Rates among Pulmonary and Critical Care Journals. Annals of the American Thoracic Society.

Baseline plasma IL-18 may predict simvastatin treatment response in patients with ARDS: a secondary analysis of the HARP-2 randomised clinical trial.
Boyle, A. J., Ferris, P., Bradbury, I., Conlon, J., Shankar-Hari, M., Rogers, A. J., … McAuley, D. F. (2022). Baseline plasma IL-18 may predict simvastatin treatment response in patients with ARDS: a secondary analysis of the HARP-2 randomised clinical trial. Critical Care (London, England), 26(1), 164.

COVID-19 Acute Respiratory Distress Syndrome: One Pathogen, Multiple Phenotypes.
Empson, S., Rogers, A. J., & Wilson, J. G. (2022). COVID-19 Acute Respiratory Distress Syndrome: One Pathogen, Multiple Phenotypes. Critical Care Clinics, 38(3), 505–519.

The Influence of the COVID-19 Pandemic on Author Gender and Manuscript Acceptance Rates Among Pulmonary and Critical Care Journals
Vranas, K. C., Gershengorn, H. B., Ouyang, D., Cheng, S., Rogers, A., Schweiger, L., … Slatore, C. G. (2022). The Influence of the COVID-19 Pandemic on Author Gender and Manuscript Acceptance Rates Among Pulmonary and Critical Care Journals. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE. AMER THORACIC SOC.

A Retrospective Analysis of Medical Student Performance Evaluations, 2014-2020: Recommend with Reservations.
Tisdale, R. L., Filsoof, A. R., Singhal, S., Caceres, W., Nallamshetty, S., Rogers, A. J., … Witteles, R. M. (2022). A Retrospective Analysis of Medical Student Performance Evaluations, 2014-2020: Recommend with Reservations. Journal of General Internal Medicine.

Machine learning approaches to the human metabolome in sepsis identify metabolic links with survival.
Kosyakovsky, L. B., Somerset, E., Rogers, A. J., Sklar, M., Mayers, J. R., Toma, A., … Lawler, P. R. (2022). Machine learning approaches to the human metabolome in sepsis identify metabolic links with survival. Intensive Care Medicine Experimental, 10(1), 24.

Biochemical, biophysical, and immunological characterization of respiratory secretions in severe SARS-CoV-2 infections.
Kratochvil, M. J., Kaber, G., Demirdjian, S., Cai, P. C., Burgener, E. B., Nagy, N., … Bollyky, P. L. (2022). Biochemical, biophysical, and immunological characterization of respiratory secretions in severe SARS-CoV-2 infections. JCI Insight, 7(12).

Sex differences in the mortality rate for coronavirus disease 2019 compared to other causes of death: an analysis of population-wide data from 63 countries.
Geldsetzer, P., Mukama, T., Jawad, N. K., Riffe, T., Rogers, A., & Sudharsanan, N. (2022). Sex differences in the mortality rate for coronavirus disease 2019 compared to other causes of death: an analysis of population-wide data from 63 countries. European Journal of Epidemiology.

Anti-nucleocapsid antibody levels and pulmonary comorbid conditions are linked to post-COVID-19 syndrome.
Jia, X., Cao, S., Lee, A. S., Manohar, M., Sindher, S. B., Ahuja, N., … Nadeau, K. C. (2022). Anti-nucleocapsid antibody levels and pulmonary comorbid conditions are linked to post-COVID-19 syndrome. JCI Insight, 7(13).

Anti-type I interferon antibodies as a cause of severe COVID-19.
Fajgenbaum, D. C., Hayday, A. C., Rogers, A. J., Towers, G. J., Wack, A., & Zanoni, I. (2022). Anti-type I interferon antibodies as a cause of severe COVID-19. Faculty Reviews, 11, 15.

Efficacy and safety of two neutralising monoclonal antibody therapies, sotrovimab and BRII-196 plus BRII-198, for adults hospitalised with COVID-19 (TICO): a randomised controlled trial
Self, W. H., Sandkovsky, U., Reilly, C. S., Vock, D. M., Gottlieb, R. L., Mack, M., … Lundgren, J. D. (2022). Efficacy and safety of two neutralising monoclonal antibody therapies, sotrovimab and BRII-196 plus BRII-198, for adults hospitalised with COVID-19 (TICO): a randomised controlled trial. LANCET INFECTIOUS DISEASES, 22(5), 622–635.

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study.
Ozonoff, A., Schaenman, J., Jayavelu, N. D., Milliren, C. E., Calfee, C. S., Cairns, C. B., … Rouphael, N. (2022). Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study. EBioMedicine, 83, 104208.

Lessons from an international trial evaluating vaccination strategies for recovered inpatients with COVID-19 (VATICO).
Mylonakis, E., Lutaakome, J., Jain, M. K., Rogers, A. J., Molto, J., Benet, S., … Lundgren, J. D. (2022). Lessons from an international trial evaluating vaccination strategies for recovered inpatients with COVID-19 (VATICO). Med (New York, N.Y.), 3(8), 531–537.

Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy.
Parikh, V. N., Ioannidis, A. G., Jimenez-Morales, D., Gorzynski, J. E., De Jong, H. N., Liu, X., … Ashley, E. A. (2022). Deconvoluting complex correlates of COVID-19 severity with a multi-omic pandemic tracking strategy. Nature Communications, 13(1), 5107.

Functional, imaging, and respiratory evaluation (FIRE) of patients post-hospitalization for COVID-19: protocol for a pilot observational study.
Mayer, K. P., Palakshappa, J. A., Peltan, I. D., Andrew, J. S., Gundel, S. J., Ringwood, N. J., … Jolley, S. E. (2022). Functional, imaging, and respiratory evaluation (FIRE) of patients post-hospitalization for COVID-19: protocol for a pilot observational study. Pilot and Feasibility Studies, 8(1), 212.

The Association of Baseline Plasma SARS-CoV-2 Nucleocapsid Antigen Level and Outcomes in Patients Hospitalized With COVID-19.
The Association of Baseline Plasma SARS-CoV-2 Nucleocapsid Antigen Level and Outcomes in Patients Hospitalized With COVID-19. (2022). Annals of Internal Medicine.

Using a 29-mRNA Host Response Classifier To Detect Bacterial Coinfections and Predict Outcomes in COVID-19 Patients Presenting to the Emergency Department.
Ram-Mohan, N., Rogers, A. J., Blish, C. A., Nadeau, K. C., Zudock, E. J., Kim, D., … Yang, S. (2022). Using a 29-mRNA Host Response Classifier To Detect Bacterial Coinfections and Predict Outcomes in COVID-19 Patients Presenting to the Emergency Department. Microbiology Spectrum, e0230522.

Circulating N-formylmethionine and metabolic shift in critical illness: a multicohort metabolomics study.
Sigurdsson, M. I., Kobayashi, H., Amrein, K., Nakahira, K., Rogers, A. J., Pinilla-Vera, M., … Christopher, K. B. (2022). Circulating N-formylmethionine and metabolic shift in critical illness: a multicohort metabolomics study. Critical Care (London, England), 26(1), 321.

The Metabolomics of Critical Illness.
Pacheco-Navarro, A. E., & Rogers, A. J. (2022). The Metabolomics of Critical Illness. Handbook of Experimental Pharmacology.

MUC5B Promoter Polymorphism and Development of Acute Respiratory Distress Syndrome
Rogers, A. J., Solus, J. F., Hunninghake, G. M., Baron, R. M., Meyer, N. J., Janz, D. R., … Ware, L. B. (2018). MUC5B Promoter Polymorphism and Development of Acute Respiratory Distress Syndrome. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 198(10), 1342–1345.

Airway dilation in bronchiolitis obliterans after allogeneic hematopoietic stem cell transplantation
Gazourian, L., Coronata, A. M. F., Rogers, A. J., Weinhouse, G. L., Soiffer, R. J., Antin, J. H., … Washko, G. R. (2013). Airway dilation in bronchiolitis obliterans after allogeneic hematopoietic stem cell transplantation. RESPIRATORY MEDICINE, 107(2), 276–283.

Stronger Evidence for Replication of NPPA Using Genome-wide Genotyping Data
Rogers, A. J., Raby, B. A., Lima, J., Lasky-Su, J. A., Murphy, A., Lazarus, R., … Weiss, S.-F. T. (2010). Stronger Evidence for Replication of NPPA Using Genome-wide Genotyping Data. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 181(1), 96.

Tixagevimab-cilgavimab for treatment of patients hospitalised with COVID-19: a randomised, double-blind, phase atrial
Holland, T. L., Ginde, A. A., Paredes, R., Murray, T. A., Engen, N., Grandits, G., … Lundgren, J. D. (2022). Tixagevimab-cilgavimab for treatment of patients hospitalised with COVID-19: a randomised, double-blind, phase atrial. LANCET RESPIRATORY MEDICINE, 10(10), 972–984.

Effect of total cholesterol and statin therapy on mortality in ARDS patients: a secondary analysis of the SAILS and HARP-2 trials.
Pienkos, S. M., Moore, A. R., Guan, J., Levitt, J. E., Matthay, M. A., Baron, R. M., … Rogers, A. J. (2023). Effect of total cholesterol and statin therapy on mortality in ARDS patients: a secondary analysis of the SAILS and HARP-2 trials. Critical Care (London, England), 27(1), 126.