The Ipl1-Aurora protein kinase activates the spindle checkpoint by creating unattached kinetochores
Pinsky, B. A., Kung, C., Shokat, K. M., & Biggins, S. (2006). The Ipl1-Aurora protein kinase activates the spindle checkpoint by creating unattached kinetochores. NATURE CELL BIOLOGY, 8(1), 78–U28.

Glc7/protein phosphatase 1 regulatory subunits can oppose the Ipl1/aurora protein kinase by redistributing Glc7
Pinsky, B. A., Kotwaliwale, C. V., Tatsutani, S. Y., Breed, C. A., & Biggins, S. (2006). Glc7/protein phosphatase 1 regulatory subunits can oppose the Ipl1/aurora protein kinase by redistributing Glc7. MOLECULAR AND CELLULAR BIOLOGY, 26(7), 2648–2660.

Multiplex real-time PCR assay for rapid identification of Mycobacterium tuberculosis complex members to the species level
Pinsky, B. A., & Banaei, N. (2008). Multiplex real-time PCR assay for rapid identification of Mycobacterium tuberculosis complex members to the species level. JOURNAL OF CLINICAL MICROBIOLOGY, 46(7), 2241–46.

Bartholin's abscess caused by hypermucoviscous Klebsiella pneumoniae
Pinsky, B. A., Baron, E. J., Janda, J. M., & Banaei, N. (2009). Bartholin's abscess caused by hypermucoviscous Klebsiella pneumoniae. JOURNAL OF MEDICAL MICROBIOLOGY, 58(5), 671–73.

Hair Sheep Blood, Citrated or Defibrinated, Fulfills All Requirements of Blood Agar for Diagnostic Microbiology Laboratory Tests
Yeh, E., Pinsky, B. A., Banaei, N., & Baron, E. J. (2009). Hair Sheep Blood, Citrated or Defibrinated, Fulfills All Requirements of Blood Agar for Diagnostic Microbiology Laboratory Tests. PLOS ONE, 4(7).

Protein Phosphatase 1 Regulates Exit from the Spindle Checkpoint in Budding Yeast
Pinsky, B. A., Nelson, C. R., & Biggins, S. (2009). Protein Phosphatase 1 Regulates Exit from the Spindle Checkpoint in Budding Yeast. CURRENT BIOLOGY, 19(14), 1182–1187.

Comparison of Real-Time PCR and Conventional Biochemical Methods for Identification of Staphylococcus lugdunensis
Pinsky, B. A., Samson, D., Ghafghaichi, L., Baron, E. J., & Banaei, N. (2009). Comparison of Real-Time PCR and Conventional Biochemical Methods for Identification of Staphylococcus lugdunensis. JOURNAL OF CLINICAL MICROBIOLOGY, 47(11), 3472–77.

First documentation of isoniazid reversion in Mycobacterium tuberculosis
Richardson, E. T., Lin, S.-Y. G., Pinsky, B. A., Desmond, E., & Banaei, N. (2009). First documentation of isoniazid reversion in Mycobacterium tuberculosis. INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE, 13(11), 1347–54.

Preferential Lower Respiratory Tract Infection in Swine-Origin 2009 A(H1N1) Influenza
Yeh, E., Luo, R. F., Dyner, L. L., Hong, D. K., Banaei, N., Baron, E. J., & Pinsky, B. A. (2010). Preferential Lower Respiratory Tract Infection in Swine-Origin 2009 A(H1N1) Influenza. CLINICAL INFECTIOUS DISEASES, 50(3), 391–94.

Real-Time PCR Testing for mecA Reduces Vancomycin Usage and Length of Hospitalization for Patients Infected with Methicillin-Sensitive Staphylococci
Nguyen, D. T., Yeh, E., Perry, S., Luo, R. F., Pinsky, B. A., Lee, B. P., … Banaei, N. (2010). Real-Time PCR Testing for mecA Reduces Vancomycin Usage and Length of Hospitalization for Patients Infected with Methicillin-Sensitive Staphylococci. JOURNAL OF CLINICAL MICROBIOLOGY, 48(3), 785–90.

Long-term Shedding of Influenza A Virus in Stool of Immunocompromised Child
Pinsky, B. A., Mix, S., Rowe, J., Ikemoto, S., & Baron, E. J. (2010). Long-term Shedding of Influenza A Virus in Stool of Immunocompromised Child. EMERGING INFECTIOUS DISEASES, 16(7), 1165–67.

Ultrasensitive Detection of Drug-Resistant Pandemic 2009 (H1N1) Influenza A Virus by Rare-Variant-Sensitive High-Resolution Melting-Curve Analysis
Chen, N., Pinsky, B. A., Lee, B. P., Lin, M., & Schrijver, I. (2011). Ultrasensitive Detection of Drug-Resistant Pandemic 2009 (H1N1) Influenza A Virus by Rare-Variant-Sensitive High-Resolution Melting-Curve Analysis. JOURNAL OF CLINICAL MICROBIOLOGY, 49(7), 2602–9.

A Synonymous Change in the Influenza A Virus Neuraminidase Gene Interferes with PCR-Based Subtyping and Oseltamivir Resistance Mutation Detection
Trevino, C., Bihon, S., & Pinsky, B. A. (2011). A Synonymous Change in the Influenza A Virus Neuraminidase Gene Interferes with PCR-Based Subtyping and Oseltamivir Resistance Mutation Detection. JOURNAL OF CLINICAL MICROBIOLOGY, 49(8), 3101–3102.

Quantitation of Human Papillomavirus DNA in Plasma of Oropharyngeal Carcinoma Patients
Cao, H., Banh, A., Kwok, S., Shi, X., Wu, S., Krakow, T., … Quynh-Thu Le, Q. T. (2012). Quantitation of Human Papillomavirus DNA in Plasma of Oropharyngeal Carcinoma Patients. INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, 82(3), E351–E358.

Clinical Significance of Low Cytomegalovirus DNA Levels in Human Plasma
Waggoner, J., Ho, D. Y., Libiran, P., & Pinsky, B. A. (2012). Clinical Significance of Low Cytomegalovirus DNA Levels in Human Plasma. JOURNAL OF CLINICAL MICROBIOLOGY, 50(7), 2378–83.

Comparison of Xpert Flu rapid nucleic acid testing with rapid antigen testing for the diagnosis of influenza A and B
DiMaio, M. A., Sahoo, M. K., Waggoner, J., & Pinsky, B. A. (2012). Comparison of Xpert Flu rapid nucleic acid testing with rapid antigen testing for the diagnosis of influenza A and B. JOURNAL OF VIROLOGICAL METHODS, 186(1-2), 137–40.

An International Multicenter Performance Analysis of Cytomegalovirus Load Tests
Hirsch, H. H., Lautenschlager, I., Pinsky, B. A., Cardenoso, L., Aslam, S., Cobb, B., … Valsamakis, A. (2013). An International Multicenter Performance Analysis of Cytomegalovirus Load Tests. CLINICAL INFECTIOUS DISEASES, 56(3), 367–373.

CMV antigenemia and quantitative viral load assessments in hematopoietic stem cell transplant recipients
Cardenoso, L., Pinsky, B. A., Lautenschlager, I., Aslam, S., Cobb, B., Vilchez, R. A., & Hirsch, H. H. (2013). CMV antigenemia and quantitative viral load assessments in hematopoietic stem cell transplant recipients. JOURNAL OF CLINICAL VIROLOGY, 56(2), 108–112.

Severe Hepatitis Associated with an Echovirus 18 Infection in an Immune-Compromised Adult
Lefterova, M. I., Rivetta, C., George, T. I., & Pinsky, B. A. (2013). Severe Hepatitis Associated with an Echovirus 18 Infection in an Immune-Compromised Adult. JOURNAL OF CLINICAL MICROBIOLOGY, 51(2), 684–87.

Laboratory-Developed L1 Sequencing and Type-Specific, Real-Time Polymerase Chain Reaction for the Detection and Typing of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues
Mills, A., Balasubramaniam, R., Longacre, T. A., Kong, C. S., & Pinsky, B. A. (2013). Laboratory-Developed L1 Sequencing and Type-Specific, Real-Time Polymerase Chain Reaction for the Detection and Typing of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues. ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 137(1), 50–54.

An international collaboration to harmonize the quantitative plasma Epstein-Barr virus DNA assay for future biomarker-guided trials in nasopharyngeal carcinoma.
Le, Q.-T., Zhang, Q., Cao, H., Cheng, A.-J., Pinsky, B. A., Hong, R.-L., … Chan, K. C. A. (2013). An international collaboration to harmonize the quantitative plasma Epstein-Barr virus DNA assay for future biomarker-guided trials in nasopharyngeal carcinoma. Clinical Cancer Research , 19(8), 2208–15.

p16 Is Superior to ProEx C in Identifying High-grade Squamous Intraepithelial Lesions (HSIL) of the Anal Canal
Bala, R., Pinsky, B. A., Beck, A. H., Kong, C. S., Welton, M. L., & Longacre, T. A. (2013). p16 Is Superior to ProEx C in Identifying High-grade Squamous Intraepithelial Lesions (HSIL) of the Anal Canal. AMERICAN JOURNAL OF SURGICAL PATHOLOGY, 37(5), 659–68.

Development of an internally controlled real-time reverse transcriptase PCR assay for pan-dengue virus detection and comparison of four molecular dengue virus detection assays.
Waggoner, J. J., Abeynayake, J., Sahoo, M. K., Gresh, L., Tellez, Y., Gonzalez, K., … Pinsky, B. A. (2013). Development of an internally controlled real-time reverse transcriptase PCR assay for pan-dengue virus detection and comparison of four molecular dengue virus detection assays. Journal of Clinical Microbiology, 51(7), 2172–81.

Single-reaction, multiplex, real-time rt-PCR for the detection, quantitation, and serotyping of dengue viruses.
Waggoner, J. J., Abeynayake, J., Sahoo, M. K., Gresh, L., Tellez, Y., Gonzalez, K., … Pinsky, B. A. (2013). Single-reaction, multiplex, real-time rt-PCR for the detection, quantitation, and serotyping of dengue viruses. PLoS Neglected Tropical Diseases, 7(4).

A comparison of CMV detection in gastrointestinal mucosal biopsies using immunohistochemistry and PCR performed on formalin-fixed, paraffin-embedded tissue.
Mills, A. M., Guo, F. P., Copland, A. P., Pai, R. K., & Pinsky, B. A. (2013). A comparison of CMV detection in gastrointestinal mucosal biopsies using immunohistochemistry and PCR performed on formalin-fixed, paraffin-embedded tissue. American Journal of Surgical Pathology, 37(7), 995–1000.

Nlk is a murine protein kinase related to Erk/MAP kinases and localized in the nucleus
Brott, B. K., Pinsky, B. A., & Erikson, R. L. (1998). Nlk is a murine protein kinase related to Erk/MAP kinases and localized in the nucleus. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(3), 963–968.

The Persistence of Influenza Infection Response
Pinsky, B., & Baron, E. J. (2010). The Persistence of Influenza Infection Response. EMERGING INFECTIOUS DISEASES, 16(11), 1818–1819.

Diagnosis of Congenital CMV Using PCR Performed on Formalin-fixed, Paraffin-embedded Placental Tissue.
Folkins, A. K., Chisholm, K. M., Guo, F. P., McDowell, M., Aziz, N., & Pinsky, B. A. (2013). Diagnosis of Congenital CMV Using PCR Performed on Formalin-fixed, Paraffin-embedded Placental Tissue. American Journal of Surgical Pathology, 37(9), 1413–20.

Comparison of the FDA-Approved CDC DENV-1-4 Real-Time Reverse Transcription-PCR with a Laboratory-Developed Assay for Dengue Virus Detection and Serotyping.
Waggoner, J. J., Abeynayake, J., Sahoo, M. K., Gresh, L., Tellez, Y., Gonzalez, K., … Pinsky, B. A. (2013). Comparison of the FDA-Approved CDC DENV-1-4 Real-Time Reverse Transcription-PCR with a Laboratory-Developed Assay for Dengue Virus Detection and Serotyping. Journal of Clinical Microbiology, 51(10), 3418–20.

Profound plasmacytosis in a patient with dengue
Ewalt, M. D., Abeynayake, J., Waggoner, J. J., Pinsky, B. A., & Ohgami, R. S. (2013). Profound plasmacytosis in a patient with dengue. International Journal of Hematology , 518–19.

Detection of cytomegalovirus drug resistance mutations by next-generation sequencing.
Sahoo, M. K., Lefterova, M. I., Yamamoto, F., Waggoner, J. J., Chou, S., Holmes, S. P., … Pinsky, B. A. (2013). Detection of cytomegalovirus drug resistance mutations by next-generation sequencing. Journal of Clinical Microbiology, 51(11), 3700–3710.

Profound plasmacytosis in a patient with dengue.
Ewalt, M. D., Abeynayake, J., Waggoner, J. J., Pinsky, B. A., & Ohgami, R. S. (2013). Profound plasmacytosis in a patient with dengue. International Journal of Hematology, 98(5), 518–19.

BK Polyomavirus Subtype III in a Pediatric Renal Transplant Patient with Nephropathy.
Kapusinszky, B., Chen, S. F., Sahoo, M. K., Lefterova, M. I., Kjelson, L., Grimm, P. C., … Pinsky, B. A. (2013). BK Polyomavirus Subtype III in a Pediatric Renal Transplant Patient with Nephropathy. Journal of Clinical Microbiology, 51(12), 4255–58.

Reply to "Inconclusive reverse transcription-PCR assay comparison for dengue virus detection and serotyping".
Waggoner, J. J., & Pinsky, B. A. (2014). Reply to "Inconclusive reverse transcription-PCR assay comparison for dengue virus detection and serotyping". Journal of Clinical Microbiology, 52(5), 1801–2.

Multiplex nucleic Acid amplification test for diagnosis of dengue Fever, malaria, and leptospirosis.
Waggoner, J. J., Abeynayake, J., Balassiano, I., Lefterova, M., Sahoo, M. K., Liu, Y., … Pinsky, B. A. (2014). Multiplex nucleic Acid amplification test for diagnosis of dengue Fever, malaria, and leptospirosis. Journal of Clinical Microbiology, 52(6), 2011–18.

Human Papilloma Virus is not Prevalent in Nevus Sebaceus
Kim, D., Benjamin, L. T., Sahoo, M. K., Kim, J., & Pinsky, B. A. (2014). Human Papilloma Virus is not Prevalent in Nevus Sebaceus. PEDIATRIC DERMATOLOGY, 31(3), 326–30.

Comparison of automated nucleic acid extraction methods for the detection of cytomegalovirus DNA in fluids and tissues.
Waggoner, J. J., & Pinsky, B. A. (2014). Comparison of automated nucleic acid extraction methods for the detection of cytomegalovirus DNA in fluids and tissues. PeerJ, 2.

Evaluation of serial urine viral cultures for the diagnosis of cytomegalovirus infection in neonates and infants.
Chisholm, K. M., Aziz, N., McDowell, M., Guo, F. P., Srinivas, N., Benitz, W. E., … Pinsky, B. A. (2014). Evaluation of serial urine viral cultures for the diagnosis of cytomegalovirus infection in neonates and infants. Pediatric and Developmental Pathology , 17(3), 176–80.

Improved detection of emerging drug-resistant mutant cytomegalovirus subpopulations by deep sequencing.
Chou, S., Ercolani, R. J., Sahoo, M. K., Lefterova, M. I., Strasfeld, L. M., & Pinsky, B. A. (2014). Improved detection of emerging drug-resistant mutant cytomegalovirus subpopulations by deep sequencing. Antimicrobial Agents and Chemotherapy, 58(8), 4697–4702.

Encephalitis caused by chikungunya virus in a traveler from the kingdom of tonga.
Nelson, J., Waggoner, J. J., Sahoo, M. K., Grant, P. M., & Pinsky, B. A. (2014). Encephalitis caused by chikungunya virus in a traveler from the kingdom of tonga. Journal of Clinical Microbiology, 52(9), 3459–61.

Commutability of the Epstein-Barr Virus WHO International Standard across Two Quantitative PCR Methods
Abeynayake, J., Johnson, R., Libiran, P., Sahoo, M. K., Cao, H., Bowen, R., … Pinsky, B. A. (2014). Commutability of the Epstein-Barr Virus WHO International Standard across Two Quantitative PCR Methods. JOURNAL OF CLINICAL MICROBIOLOGY, 52(10), 3802–4.

Sensitive Real-Time PCR Detection of Pathogenic Leptospira spp. and a Comparison of Nucleic Acid Amplification Methods for the Diagnosis of Leptospirosis
Waggoner, J. J., Balassiano, I., Abeynayake, J., Sahoo, M. K., Mohamed-Hadley, A., Liu, Y., … Pinsky, B. A. (2014). Sensitive Real-Time PCR Detection of Pathogenic Leptospira spp. and a Comparison of Nucleic Acid Amplification Methods for the Diagnosis of Leptospirosis. PLOS ONE, 9(11).

Improved serotype-specific dengue virus detection in Trinidad and Tobago using a multiplex, real-time RT-PCR.
Waggoner, J. J., Sahadeo, N. S. D., Brown, A., Mohamed-Hadley, A., Hadley, D., Carrington, L., … Pinsky, B. A. (2015). Improved serotype-specific dengue virus detection in Trinidad and Tobago using a multiplex, real-time RT-PCR. Diagnostic Microbiology and Infectious Disease, 81(2), 105–6.

Norovirus
Robilotti, E., Deresinski, S., & Pinsky, B. A. (2015). Norovirus. CLINICAL MICROBIOLOGY REVIEWS, 28(1), 134–64.

How great is the threat of chikungunya virus?
Waggoner, J. J., & Pinsky, B. A. (2015). How great is the threat of chikungunya virus? Expert Review of Anti-Infective Therapy, 13(3), 291–93.

Norovirus.
Robilotti, E., Deresinski, S., & Pinsky, B. A. (2015). Norovirus. Clinical Microbiology Reviews, 28(1), 134–64.

Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient
Gomez, A. J., Waggoner, J. J., Itoh, M., Hollander, S. A., Gutierrez, K. M., Budvytiene, I., … Pinsky, B. A. (2015). Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient. JOURNAL OF CLINICAL MICROBIOLOGY, 53(8), 2749–52.

Cytomegalovirus load at treatment initiation is predictive of time to resolution of viremia and duration of therapy in hematopoietic cell transplant recipients
Tan, S. K., Waggoner, J. J., & Pinsky, B. A. (2015). Cytomegalovirus load at treatment initiation is predictive of time to resolution of viremia and duration of therapy in hematopoietic cell transplant recipients. JOURNAL OF CLINICAL VIROLOGY, 69, 179–83.

Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing.
Waggoner, J. J., Balassiano, I., Mohamed-Hadley, A., Vital-Brazil, J. M., Sahoo, M. K., & Pinsky, B. A. (2015). Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing. PloS One, 10(7).

Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing
Waggoner, J. J., Balassiano, I., Mohamed-Hadley, A., Vital-Brazil, J. M., Sahoo, M. K., & Pinsky, B. A. (2015). Reverse-Transcriptase PCR Detection of Leptospira: Absence of Agreement with Single-Specimen Microscopic Agglutination Testing. PLOS ONE, 10(7).

Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing.
Sahoo, M. K., Tan, S. K., Chen, S. F., Kapusinszky, B., Concepcion, K. R., Kjelson, L., … Pinsky, B. A. (2015). Limited Variation in BK Virus T-Cell Epitopes Revealed by Next-Generation Sequencing. Journal of Clinical Microbiology, 53(10), 3226–33.

Molecular Detection of Leptospira in Two Returned Travelers: Higher Bacterial Load in Cerebrospinal Fluid Versus Serum or Plasma.
Waggoner, J. J., Soda, E. A., Seibert, R., Grant, P., & Pinsky, B. A. (2015). Molecular Detection of Leptospira in Two Returned Travelers: Higher Bacterial Load in Cerebrospinal Fluid Versus Serum or Plasma. American Journal of Tropical Medicine and Hygiene, 93(2), 238–40.

Comparison of automated nucleic acid extraction methods for the detection of cytomegalovirus DNA in fluids and tissues.
Waggoner, J. J., & Pinsky, B. A. (2014). Comparison of automated nucleic acid extraction methods for the detection of cytomegalovirus DNA in fluids and tissues. PeerJ, 2, e334.

Sensitive real-time PCR detection of pathogenic Leptospira spp. and a comparison of nucleic acid amplification methods for the diagnosis of leptospirosis.
Waggoner, J. J., Balassiano, I., Abeynayake, J., Sahoo, M. K., Mohamed-Hadley, A., Liu, Y., … Pinsky, B. A. (2014). Sensitive real-time PCR detection of pathogenic Leptospira spp. and a comparison of nucleic acid amplification methods for the diagnosis of leptospirosis. PloS One, 9(11).

Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus
Pinsky, B. A., Sahoo, M. K., Sandlund, J., Kleman, M., Kulkarni, M., Grufman, P., … Persing, D. H. (2015). Analytical Performance Characteristics of the Cepheid GeneXpert Ebola Assay for the Detection of Ebola Virus. PLOS ONE, 10(11).

Next-Generation Sequencing for Infectious Disease Diagnosis and Management A Report of the Association for Molecular Pathology
Lefterova, M. I., Suarez, C. J., Banaei, N., & Pinsky, B. A. (2015). Next-Generation Sequencing for Infectious Disease Diagnosis and Management A Report of the Association for Molecular Pathology. JOURNAL OF MOLECULAR DIAGNOSTICS, 17(6), 623–34.

Molecular Testing for Plasmodium falciparum by Use of Serum or Plasma and Comparison with Microscopy and Rapid Diagnostic Testing in Febrile Nigerian Patients.
Waggoner, J. J., Okangba, C., Mohamed-Hadley, A., Lefterova, M. I., Banaei, N., Oyibo, W., & Pinsky, B. A. (2015). Molecular Testing for Plasmodium falciparum by Use of Serum or Plasma and Comparison with Microscopy and Rapid Diagnostic Testing in Febrile Nigerian Patients. Journal of Clinical Microbiology, 53(11), 3596–3600.

Homotypic Dengue Virus Reinfections in Nicaraguan Children.
Waggoner, J. J., Balmaseda, A., Gresh, L., Sahoo, M. K., Montoya, M., Wang, C., … Harris, E. (2016). Homotypic Dengue Virus Reinfections in Nicaraguan Children. Journal of Infectious Diseases, 214(7), 986–93.

Clinical evaluation of a single-reaction real-time RT-PCR for pan-dengue and chikungunya virus detection
Waggoner, J. J., Ballesteros, G., Gresh, L., Mohamed-Hadley, A., Tellez, Y., Sahoo, M. K., … Pinsky, B. A. (2016). Clinical evaluation of a single-reaction real-time RT-PCR for pan-dengue and chikungunya virus detection. JOURNAL OF CLINICAL VIROLOGY, 78, 57–61.

Zika Virus: Diagnostics for an Emerging Pandemic Threat.
Waggoner, J. J., & Pinsky, B. A. (2016). Zika Virus: Diagnostics for an Emerging Pandemic Threat. Journal of Clinical Microbiology, 54(4), 860–67.

Molecular and Culture-Based Bronchoalveolar Lavage Fluid Testing for the Diagnosis of Cytomegalovirus Pneumonitis.
Tan, S. K., Burgener, E. B., Waggoner, J. J., Gajurel, K., Gonzalez, S., Chen, S. F., & Pinsky, B. A. (2016). Molecular and Culture-Based Bronchoalveolar Lavage Fluid Testing for the Diagnosis of Cytomegalovirus Pneumonitis. Open Forum Infectious Diseases, 3(1), ofv212-?

Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility
Varghese, V., Pinsky, B. A., Smith, D. S., Klein, D., & Shafer, R. W. (2016). Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility. AIDS RESEARCH AND HUMAN RETROVIRUSES, 32(7), 702–4.

Clinical characteristics and outcomes of pediatric patients with CMV DNA detection in bronchoalveolar lavage fluid.
Burgener, E. B., Waggoner, J., Pinsky, B. A., & Chen, S. F. (2017). Clinical characteristics and outcomes of pediatric patients with CMV DNA detection in bronchoalveolar lavage fluid. Pediatric Pulmonology, 52(1), 112–18.

Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses
Waggoner, J. J., Gresh, L., Mohamed-Hadley, A., Ballesteros, G., Vargas Davila, M. J., Tellez, Y., … Pinsky, B. A. (2016). Single-Reaction Multiplex Reverse Transcription PCR for Detection of Zika, Chikungunya, and Dengue Viruses. EMERGING INFECTIOUS DISEASES, 22(7), 1295–1297.

Molecular diagnostics for human leptospirosis.
Waggoner, J. J., & Pinsky, B. A. (2016). Molecular diagnostics for human leptospirosis. Current Opinion in Infectious Diseases, 29(5), 440–45.

Evaluation of the Aptima HIV-1 Quant Dx Assay Using Plasma and Dried Blood Spots.
Sahoo, M. K., Varghese, V., White, E., Winslow, M., Katzenstein, D. A., Shafer, R. W., & Pinsky, B. A. (2016). Evaluation of the Aptima HIV-1 Quant Dx Assay Using Plasma and Dried Blood Spots. Journal of Clinical Microbiology, 54(10), 2597–2601.

Viremia and Clinical Presentation in Nicaraguan Patients Infected with Zika Virus, Chikungunya Virus, and Dengue Virus.
Waggoner, J. J., Gresh, L., Vargas, M. J., Ballesteros, G., Tellez, Y., Soda, K. J., … Pinsky, B. A. (2016). Viremia and Clinical Presentation in Nicaraguan Patients Infected with Zika Virus, Chikungunya Virus, and Dengue Virus. Clinical Infectious Diseases .

Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador.
Zambrano, H., Waggoner, J. J., Almeida, C., Rivera, L., Benjamin, J. Q., & Pinsky, B. A. (2016). Zika Virus and Chikungunya Virus CoInfections: A Series of Three Cases from a Single Center in Ecuador. American Journal of Tropical Medicine and Hygiene, 95(4), 894–96.

IgG antibodies to dengue enhanced for Fc?RIIIA binding determine disease severity.
Wang, T. T., Sewatanon, J., Memoli, M. J., Wrammert, J., Bournazos, S., Bhaumik, S. K., … Ravetch, J. V. (2017). IgG antibodies to dengue enhanced for Fc?RIIIA binding determine disease severity. Science (New York, N.Y.), 355(6323), 395–398.

T cells expand after solid organ transplantation in the absence of CMV disease.
Higdon, L. E., Trofe-Clark, J., Liu, S., Margulies, K. B., Sahoo, M. K., Blumberg, E., … Maltzman, J. S. (2017). T cells expand after solid organ transplantation in the absence of CMV disease. American Journal of Transplantation .

Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel
Gomez, C. A., Pinsky, B. A., Liu, A., & Banaei, N. (2016). Delayed Diagnosis of Tuberculous Meningitis Misdiagnosed as Herpes Simplex Virus-1 Encephalitis With the FilmArray Syndromic Polymerase Chain Reaction Panel . Open Forum Infectious Diseases, ofw245.

Diagnosis of Zika virus infection on a nanotechnology platform.
Zhang, B., Pinsky, B. A., Ananta, J. S., Zhao, S., Arulkumar, S., Wan, H., … Dai, H. (2017). Diagnosis of Zika virus infection on a nanotechnology platform. Nature Medicine.

Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus.
Tan, S. K., Milligan, S., Sahoo, M. K., Taylor, N., & Pinsky, B. A. (2017). Calibration of BK Virus Nucleic Acid Amplification Testing to the 1st WHO International Standard for BK Virus. Journal of Clinical Microbiology, 55(3), 923–30.

Zika Virus, Chikungunya Virus, and Dengue Virus in Cerebrospinal Fluid from Adults with Neurological Manifestations, Guayaquil, Ecuador.
Acevedo, N., Waggoner, J., Rodriguez, M., Rivera, L., Landivar, J., Pinsky, B., & Zambrano, H. (2017). Zika Virus, Chikungunya Virus, and Dengue Virus in Cerebrospinal Fluid from Adults with Neurological Manifestations, Guayaquil, Ecuador. Frontiers in Microbiology, 8, 42-?

High incidence of Zika virus infection detected in plasma and cervical cytology specimens from pregnant women in Guayaquil, Ecuador.
Zambrano, H., Waggoner, J., León, K., Pinsky, B., Vera, K., Schettino, M., … Mor, G. (2017). High incidence of Zika virus infection detected in plasma and cervical cytology specimens from pregnant women in Guayaquil, Ecuador. American Journal of Reproductive Immunology , 77(2).

Stability of Zika Virus in Urine: Specimen Processing Considerations and Implications for the Detection of RNA Targets in Urine.
Tan, S. K., Sahoo, M. K., Milligan, S., Taylor, N., & Pinsky, B. A. (2017). Stability of Zika Virus in Urine: Specimen Processing Considerations and Implications for the Detection of RNA Targets in Urine. Journal of Virological Methods.

Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality.
Cox, K., Punn, R., Weiskopf, E., Pinsky, B. A., & Kharbanda, S. (2017). Pericardial Effusion Following Hematopoietic Cell Transplantation in Children and Young Adults Is Associated with Increased Risk of Mortality. Biology of Blood and Marrow Transplantation .

Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing.
Sahoo, M. K., Holubar, M., Huang, C., Mohamed-Hadley, A., Liu, Y., Waggoner, J. J., … Pinsky, B. A. (2017). Detection of Emerging Vaccine-Related Polioviruses by Deep Sequencing. Journal of Clinical Microbiology.

Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections.
Doan, T., Acharya, N. R., Pinsky, B. A., Sahoo, M. K., Chow, E. D., Banaei, N., … DeRisi, J. L. (2017). Metagenomic DNA Sequencing for the Diagnosis of Intraocular Infections. Ophthalmology.

The Human Virome - Implications for Clinical Practice in Transplantation Medicine.
Tan, S. K., Relman, D. A., & Pinsky, B. A. (2017). The Human Virome - Implications for Clinical Practice in Transplantation Medicine. Journal of Clinical Microbiology.

Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing.
Clutter, D. S., Zhou, S., Varghese, V., Rhee, S.-Y. Y., Pinsky, B. A., Jeffrey Fessel, W., … Shafer, R. W. (2017). Prevalence of Drug-Resistant Minority Variants in Untreated HIV-1-Infected Individuals With and Those Without Transmitted Drug Resistance Detected by Sanger Sequencing. The Journal of Infectious Diseases, 216(3), 387–91.

The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman.
Joshi, R. P., Gomez, C. A., Steiner, D., Aziz, N., & Pinsky, B. A. (2017). The Brief Case: Confirmed Positive HIV-1 Serologic Screening but Undetectable RNA Virus Load in a Pregnant Woman. Journal of Clinical Microbiology, 55(12), 3316–20.

Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman.
Joshi, R. P., Gomez, C. A., Steiner, D., Aziz, N., & Pinsky, B. A. (2017). Closing the Brief Case: Confirmed Positive HIV-1 Serological Screening but Undetectable RNA Virus Load in a Pregnant Woman. Journal of Clinical Microbiology, 55(12), 3566–67.

Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya
Waggoner, J., Heath, C. J., Ndenga, B., Mutuku, F., Sahoo, M. K., Mohamed-Hadley, A., … Pinsky, B. A. (2017). Development of a Real-Time Reverse Transcription Polymerase Chain Reaction for O'nyong-nyong Virus and Evaluation with Clinical and Mosquito Specimens from Kenya. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 97(1), 121–24.

Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children
Waggoner, J., Brichard, J., Mutuku, F., Ndenga, B., Heath, C. J., Mohamed-Hadley, A., … LaBeaud, A. D. (2017). Malaria and Chikungunya Detected Using Molecular Diagnostics Among Febrile Kenyan Children. OPEN FORUM INFECTIOUS DISEASES, 4(3), ofx110.

High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality
Winestone, L. E., Punn, R., Tamaresis, J. S., Buckingham, J., Pinsky, B. A., Waggoner, J. J., & Kharbanda, S. (2018). High human herpesvirus 6 viral load in pediatric allogeneic hematopoietic stem cell transplant patients is associated with detection in end organs and high mortality. PEDIATRIC TRANSPLANTATION, 22(2).

Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer
Kim, K. Y., Le, Q.-T., Yom, S. S., Pinsky, B. A., Bratman, S. V., Ng, R. H. W., … Conley, B. A. (2017). Current State of PCR-Based Epstein-Barr Virus DNA Testing for Nasopharyngeal Cancer. JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 109(4).

Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing
Tzou, P. L., Ariyaratne, P., Varghese, V., Lee, C., Rakhmanaliev, E., Villy, C., … Shafer, R. W. (2018). Comparison of an In Vitro Diagnostic Next-Generation Sequencing Assay with Sanger Sequencing for HIV-1 Genotypic Resistance Testing. JOURNAL OF CLINICAL MICROBIOLOGY, 56(6).

Zika and Chikungunya virus detection in naturally infected Aedes aegypti in Ecuador
Cevallos, V., Ponce, P., Waggoner, J. J., Pinsky, B. A., Coloma, J., Quiroga, C., … Cardenas, M. J. (2018). Zika and Chikungunya virus detection in naturally infected Aedes aegypti in Ecuador. ACTA TROPICA, 177, 74–80.

Real-time RT-PCR for Mayaro virus detection in plasma and urine
Waggoner, J. J., Rojas, A., Mohamed-Hadley, A., Arevalo de Guillen, Y., & Pinsky, B. A. (2018). Real-time RT-PCR for Mayaro virus detection in plasma and urine. JOURNAL OF CLINICAL VIROLOGY, 98, 1–4.

Molecular diagnosis of Zika virus infections
St George, K., & Pinsky, B. A. (2018). Molecular diagnosis of Zika virus infections. REVIEWS IN MEDICAL MICROBIOLOGY, 29(1), 8–16.

FOXP3-positive T-cell lymphomas in non-HTLV1 carriers include ALK-negative anaplastic large cell lymphoma: expanding the Spectrum of T-cell lymphomas with regulatory phenotype.
Ferreira, C. R., Zhao, S., Sahoo, M. K., Pinsky, B., Weber, J., Lage, L. A., … Natkunam, Y. (2018). FOXP3-positive T-cell lymphomas in non-HTLV1 carriers include ALK-negative anaplastic large cell lymphoma: expanding the Spectrum of T-cell lymphomas with regulatory phenotype. Human Pathology.

Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection
Rojas, A., Diagne, C. T., Stittleburg, V. D., Mohamed-Hadley, A., Arevalo de Guillen, Y., Balmaseda, A., … Waggoner, J. J. (2018). Internally Controlled, Multiplex Real-Time Reverse Transcription PCR for Dengue Virus and Yellow Fever Virus Detection. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 98(6), 1833–36.

Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013
Cobey, S., Gouma, S., Parkhouse, K., Chambers, B. S., Ertl, H. C., Schmader, K. E., … Grad, Y. H. (2018). Poor Immunogenicity, Not Vaccine Strain Egg Adaptation, May Explain the Low H3N2 Influenza Vaccine Effectiveness in 2012-2013. CLINICAL INFECTIOUS DISEASES, 67(3), 327–33.

Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip
Hassibi, A., Manickam, A., Singh, R., Bolouki, S., Sinha, R., Jirage, K. B., … Schoolnik, G. (2018). Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip. NATURE BIOTECHNOLOGY, 36(8), 738–45.

Native Kidney Cytomegalovirus Nephritis and Cytomegalovirus Prostatitis in a Kidney Transplant Recipient.
Tan, S. K., Cheng, X. S., Kao, C.-S., Weber, J., Pinsky, B. A., Gill, H. S., … Tan, J. C. (2018). Native Kidney Cytomegalovirus Nephritis and Cytomegalovirus Prostatitis in a Kidney Transplant Recipient. Transplant Infectious Disease : an Official Journal of the Transplantation Society, e12998.

Yellow Fever Virus: Diagnostics for a Persistent Arboviral Threat
Waggoner, J. J., Rojas, A., & Pinsky, B. A. (2018). Yellow Fever Virus: Diagnostics for a Persistent Arboviral Threat. JOURNAL OF CLINICAL MICROBIOLOGY, 56(10).

Deep Sequencing Prompts the Modification of a Real-time RT-PCR for the Serotype-Specific Detection of Polioviruses.
Holubar, M., Sahoo, M. K., Huang, C. H., Mohamed-Hadley, A., Liu, Y., Waggoner, J. J., … Pinsky, B. A. (2018). Deep Sequencing Prompts the Modification of a Real-time RT-PCR for the Serotype-Specific Detection of Polioviruses. Journal of Virological Methods.

Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue.
Zanini, F., Robinson, M. L., Croote, D., Sahoo, M. K., Sanz, A. M., Ortiz-Lasso, E., … Einav, S. (2018). Virus-inclusive single-cell RNA sequencing reveals the molecular signature of progression to severe dengue. Proceedings of the National Academy of Sciences of the United States of America.

A 20-Gene Set Predictive of Progression to Severe Dengue.
Robinson, M., Sweeney, T. E., Barouch-Bentov, R., Sahoo, M. K., Kalesinskas, L., Vallania, F., … Einav, S. (2019). A 20-Gene Set Predictive of Progression to Severe Dengue. Cell Reports, 26(5), 1104.

Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance.
Tang, J. W., Lam, T. T., Zaraket, H., Lipkin, W. I., Drews, S. J., Hatchette, T. F., … Koopmans, M. P. (2017). Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance. The Lancet. Infectious Diseases, 17(10), e320–e326.

Current and future molecular diagnostics for ocular infectious diseases.
Doan, T., & Pinsky, B. A. (2016). Current and future molecular diagnostics for ocular infectious diseases. Current Opinion in Ophthalmology, 27(6), 561–67.

A Case Report of Pediatric Clear Cell Carcinoma of the Urinary Bladder Associated With Polyomavirus
Saleem, A., Brown, R. A., Higgins, J. P. T., Troxell, M. L., Kunder, C. A., Pinsky, B. A., … Kao, C.-S. (2018). A Case Report of Pediatric Clear Cell Carcinoma of the Urinary Bladder Associated With Polyomavirus. AJSP-REVIEWS AND REPORTS, 23(6), 291–95.

Persistence of Human Immunodeficiency Virus-1 Drug Resistance Mutations in Proviral Deoxyribonucleic Acid After Virologic Failure of Efavirenz-Containing Antiretroviral Regimens.
De La Cruz, J., Vardhanbhuti, S., Sahoo, M. K., Rovner, R., Bosch, R. J., Manasa, J., … Pinsky, B. A. (2019). Persistence of Human Immunodeficiency Virus-1 Drug Resistance Mutations in Proviral Deoxyribonucleic Acid After Virologic Failure of Efavirenz-Containing Antiretroviral Regimens. Open Forum Infectious Diseases, 6(3), ofz034.

Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua
Waggoner, J. J., Gresh, L., Mohamed-Hadley, A., Balmaseda, A., Soda, K. J., Abeynayake, J., … Pinsky, B. A. (2017). Characterization of Dengue Virus Infections Among Febrile Children Clinically Diagnosed With a Non-Dengue Illness, Managua, Nicaragua. JOURNAL OF INFECTIOUS DISEASES, 215(12), 1816–23.

ARBOVIRUS AND MALARIA CO-INFECTIONS AMONG FEBRILE KENYAN CHILDREN
Shah, M., Sahoo, M., Krystosik, A., Mutuku, F., Ndenga, B., Otuka, V., … LaBeaud, A. (2018). ARBOVIRUS AND MALARIA CO-INFECTIONS AMONG FEBRILE KENYAN CHILDREN. AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 99(4), 162–63.

Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient.
Gomez, A. J., Waggoner, J. J., Itoh, M., Hollander, S. A., Gutierrez, K. M., Budvytiene, I., … Pinsky, B. A. (2015). Fatal West Nile Virus Encephalitis in a Heart Transplant Recipient. Journal of Clinical Microbiology.

hrHPV prevalence and type distribution in rural Zimbabwe: A community-based self-collection study using near-point-of-care GeneXpert HPV testing
Fitzpatrick, M. B., Mandishora, R. S. D., Katzenstein, D. A., McCarty, K., Weber, J., Sahoo, M. K., … Pinsky, B. A. (2019). hrHPV prevalence and type distribution in rural Zimbabwe: A community-based self-collection study using near-point-of-care GeneXpert HPV testing. INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES, 82, 21–29.

Community-based self-collected human papillomavirus screening in rural Zimbabwe.
Fitzpatrick, M. B., El-Khatib, Z., Katzenstein, D., Pinsky, B. A., Chirenje, Z. M., & McCarty, K. (2019). Community-based self-collected human papillomavirus screening in rural Zimbabwe. BMC Public Health, 19(Suppl 1), 603.

Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population
Rhee, S.-Y., Clutter, D., Fessel, W. J., Klein, D., Slome, S., Pinsky, B. A., … Shafer, R. W. (2019). Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population. CLINICAL INFECTIOUS DISEASES, 68(2), 213–21.

Transplant Virus Detection Using Multiplex Targeted Sequencing.
Tan, S. K., Shen, P., Lefterova, M. I., Sahoo, M. K., Fung, E., Odegaard, J. I., … Scharfe, C. (2018). Transplant Virus Detection Using Multiplex Targeted Sequencing. The Journal of Applied Laboratory Medicine, 2(5), 757–69.

Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections
Gomez, C. A., Sahoo, M. K., Kahn, G. Y., Zhong, L., Montoya, J. G., Pinsky, B. A., & Thuy Doan. (2019). Dual-target, real-time PCR for the diagnosis of intraocular Toxoplasma gondii infections. BRITISH JOURNAL OF OPHTHALMOLOGY, 103(4), 569–72.

Evaluation of the Aptima HCV Quant Dx Assay Using Serum and Dried Blood Spots
Weber, J., Sahoo, M. K., Taylor, N., Shi, R.-Z., & Pinsky, B. A. (2019). Evaluation of the Aptima HCV Quant Dx Assay Using Serum and Dried Blood Spots. JOURNAL OF CLINICAL MICROBIOLOGY, 57(4).

Multiplex Solid-Phase Melt Curve Analysis for the Point-of-Care Detection of HIV-1 Drug Resistance
Clutter, D. S., Mazarei, G., Sinha, R., Manasa, J., Nouhin, J., LaPrade, E., … Shafer, R. W. (2019). Multiplex Solid-Phase Melt Curve Analysis for the Point-of-Care Detection of HIV-1 Drug Resistance. JOURNAL OF MOLECULAR DIAGNOSTICS, 21(4), 580–92.

Molecular profiling of clear cell adenocarcinoma of the urinary tract.
Lin, C.-Y. Y., Saleem, A., Stehr, H., Zehnder, J. L., Pinsky, B. A., & Kunder, C. A. (2019). Molecular profiling of clear cell adenocarcinoma of the urinary tract. Virchows Archiv : an International Journal of Pathology.

Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis
Lalitha, P., Seitzman, G. D., Kotecha, R., Hinterwirth, A., Chen, C., Zhong, L., … Thuy Doan. (2019). Unbiased Pathogen Detection and Host Gene Profiling for Conjunctivitis. OPHTHALMOLOGY, 126(8), 1090–94.

Risk prediction for severe disease and better diagnostic accuracy in early dengue infection; the Colombo dengue study.
Sigera, P. C., Amarasekara, R., Rodrigo, C., Rajapakse, S., Weeratunga, P., De Silva, N. L., … Fernando, S. D. (2019). Risk prediction for severe disease and better diagnostic accuracy in early dengue infection; the Colombo dengue study. BMC Infectious Diseases, 19(1), 680.

Prospective Evaluation of the Vela Diagnostics Next-Generation Sequencing Platform for HIV-1 Genotypic Resistance Testing.
Weber, J., Volkova, I., Sahoo, M. K., Tzou, P. L., Shafer, R. W., & Pinsky, B. A. (2019). Prospective Evaluation of the Vela Diagnostics Next-Generation Sequencing Platform for HIV-1 Genotypic Resistance Testing. The Journal of Molecular Diagnostics : JMD.

Impact of Pretransplant Donor BK Viruria in Kidney Transplant Recipients
Tan, S. K., Huang, C. H., Sahoo, M. K., Weber, J., Kurzer, J., Stedman, M. R., … Pinsky, B. A. (2019). Impact of Pretransplant Donor BK Viruria in Kidney Transplant Recipients. JOURNAL OF INFECTIOUS DISEASES, 220(3), 370–76.

Evaluating for Human Herpesvirus 6 in the Liver Explants of Children With Liver Failure of Unknown Etiology
Yang, C. H., Sahoo, M. K., Fitzpatrick, M., Lau, A. H., Pinsky, B. A., & Martinez, O. M. (2019). Evaluating for Human Herpesvirus 6 in the Liver Explants of Children With Liver Failure of Unknown Etiology. JOURNAL OF INFECTIOUS DISEASES, 220(3), 361–69.

Investigation of preanalytical variables impacting pathogen cell-free DNA in blood and urine.
Murugesan, K., Hogan, C. A., Palmer, Z., Reeve, B., Theron, G., Andama, A., … Banaei, N. (2019). Investigation of preanalytical variables impacting pathogen cell-free DNA in blood and urine. Journal of Clinical Microbiology.

Metagenomic Next-Generation Sequencing for the Identification and Quantitation of Transplant-Related DNA Viruses.
Carpenter, M. L., Tan, S. K., Watson, T., Bacher, R., Nagesh, V., Watts, A., … Pinsky, B. A. (2019). Metagenomic Next-Generation Sequencing for the Identification and Quantitation of Transplant-Related DNA Viruses. Journal of Clinical Microbiology.

Characterization of dengue cases among patients with an acute illness, Central Department, Paraguay.
Rojas, A., Cardozo, F., Cantero, C., Stittleburg, V., López, S., Bernal, C., … Waggoner, J. (2019). Characterization of dengue cases among patients with an acute illness, Central Department, Paraguay. PeerJ, 7, e7852.

Comparison of Transcription-Mediated Amplification and Real-Time PCR Assays for Hepatitis B Virus DNA Quantitation in Serum.
Weber, J., Sahoo, M. K., Taylor, N., Uy, E., Shi, R.-Z. Z., & Pinsky, B. A. (2019). Comparison of Transcription-Mediated Amplification and Real-Time PCR Assays for Hepatitis B Virus DNA Quantitation in Serum. The Journal of Applied Laboratory Medicine, 4(3), 383–90.

Real-time RT-PCR for the detection and quantitation of Oropouche virus.
Rojas, A., Stittleburg, V., Cardozo, F., Bopp, N., Cantero, C., López, S., … Waggoner, J. J. (2019). Real-time RT-PCR for the detection and quantitation of Oropouche virus. Diagnostic Microbiology and Infectious Disease, 114894.

Clinical Impact of Metagenomic Next-Generation Sequencing of Plasma Cell-Free DNA for the Diagnosis of Infectious Diseases: A Multicenter Retrospective Cohort Study.
Hogan, C. A., Yang, S., Garner, O. B., Green, D. A., Gomez, C. A., Dien Bard, J., … Banaei, N. (2020). Clinical Impact of Metagenomic Next-Generation Sequencing of Plasma Cell-Free DNA for the Diagnosis of Infectious Diseases: A Multicenter Retrospective Cohort Study. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Implementation of a Multiplex rRT-PCR for Zika, Chikungunya, and Dengue Viruses: Improving Arboviral Detection in an Endemic Region.
Cantero, C., Cardozo, F., Waggoner, J. J., Pinsky, B. A., Espinola, A., Infanzon, B., … Rojas, A. (2020). Implementation of a Multiplex rRT-PCR for Zika, Chikungunya, and Dengue Viruses: Improving Arboviral Detection in an Endemic Region. The American Journal of Tropical Medicine and Hygiene.

Human papillomavirus cytopathic effect in the urine of a 76-year-old man.
Gottlieb, C., Pinsky, B. A., Mills, A. M., & Stelow, E. B. (2020). Human papillomavirus cytopathic effect in the urine of a 76-year-old man. Diagnostic Cytopathology.

Reply to Muller and Chaudhury.
Hogan, C. A., Pinsky, B. A., & Banaei, N. (2020). Reply to Muller and Chaudhury. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma
Lawrence, L., Kunder, C., Stehr, H., Saleem, A., Natkunam, Y., Zehnder, J., … Tan, S. (2020). Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma. LABORATORY INVESTIGATION, 100(SUPPL 1), 824–26.

Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma
Lawrence, L., Kunder, C., Stehr, H., Saleem, A., Natkunam, Y., Zehnder, J., … Tan, S. (2020). Merkel Cell Carcinoma of Lymph Node is Metastatic Cutaneous Merkel Cell Carcinoma. MODERN PATHOLOGY, 33(SUPPL 2), 824–26.

A non-optical multiplexed PCR diagnostic platform for serotype-specific detection of dengue virus
Yin, Z., Ramshani, Z., Waggoner, J. J., Pinsky, B. A., Senapati, S., & Chang, H.-C. (2020). A non-optical multiplexed PCR diagnostic platform for serotype-specific detection of dengue virus. SENSORS AND ACTUATORS B-CHEMICAL, 310.

Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS-CoV-2/COVID-19.
Patel, R., Babady, E., Theel, E. S., Storch, G. A., Pinsky, B. A., St George, K., … Bertuzzi, S. (2020). Report from the American Society for Microbiology COVID-19 International Summit, 23 March 2020: Value of Diagnostic Testing for SARS-CoV-2/COVID-19. MBio, 11(2).

Antibody-Dependent Enhancement of Severe Disease Is Mediated by Serum Viral Load in Pediatric Dengue Virus Infections.
Waggoner, J. J., Katzelnick, L. C., Burger-Calderon, R., Gallini, J., Moore, R. H., Kuan, G., … Harris, E. (2020). Antibody-Dependent Enhancement of Severe Disease Is Mediated by Serum Viral Load in Pediatric Dengue Virus Infections. The Journal of Infectious Diseases.

Sample Pooling as a Strategy to Detect Community Transmission of SARS-CoV-2.
Hogan, C. A., Sahoo, M. K., & Pinsky, B. A. (2020). Sample Pooling as a Strategy to Detect Community Transmission of SARS-CoV-2. JAMA.

Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens.
Kim, D., Quinn, J., Pinsky, B., Shah, N. H., & Brown, I. (2020). Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens. JAMA.

Whole-Genome Analysis of Cervical Human Papillomavirus Type 35 from rural Zimbabwean Women.
Fitzpatrick, M. B., Hahn, Z., Mandishora, R. S., Dao, J., Weber, J., Huang, C. H., … Pinsky, B. A. (2020). Whole-Genome Analysis of Cervical Human Papillomavirus Type 35 from rural Zimbabwean Women. Scientific Reports, 10(1), 7001.

Comparison of the Panther Fusion and a laboratory-developed test targeting the envelope gene for detection of SARS-CoV-2.
Hogan, C. A., Sahoo, M. K., Huang, C. H., Garamani, N., Stevens, B., Zehnder, J., & Pinsky, B. A. (2020). Comparison of the Panther Fusion and a laboratory-developed test targeting the envelope gene for detection of SARS-CoV-2. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 127, 104383.

Five-minute point-of-care testing for SARS-CoV-2: Not there yet.
Hogan, C. A., Sahoo, M. K., Huang, C. H., Garamani, N., Stevens, B., Zehnder, J., & Pinsky, B. A. (2020). Five-minute point-of-care testing for SARS-CoV-2: Not there yet. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 128, 104410.

Is Merkel Cell Carcinoma of Lymph Node Actually Metastatic Cutaneous Merkel Cell Carcinoma?
Lawrence, L. E., Saleem, A., Sahoo, M. K., Tan, S. K., Pinsky, B. A., Natkunam, Y., … Zehnder, J. L. (2020). Is Merkel Cell Carcinoma of Lymph Node Actually Metastatic Cutaneous Merkel Cell Carcinoma? American Journal of Clinical Pathology.

Comparison of the Accula SARS-CoV-2 Test with a Laboratory-Developed Assay for Detection of SARS-CoV-2 RNA in Clinical Nasopharyngeal Specimens.
Hogan, C. A., Garamani, N., Lee, A. S., Tung, J. K., Sahoo, M. K., Huang, C. H., … Pinsky, B. A. (2020). Comparison of the Accula SARS-CoV-2 Test with a Laboratory-Developed Assay for Detection of SARS-CoV-2 RNA in Clinical Nasopharyngeal Specimens. Journal of Clinical Microbiology.

Mechanisms of Fano-resonant biosensing: Mechanical loading of plasmonic oscillators
Zhu, X., Cao, N., Thibeault, B. J., Pinsky, B., & Yanik, A. A. (2020). Mechanisms of Fano-resonant biosensing: Mechanical loading of plasmonic oscillators. OPTICS COMMUNICATIONS, 469.

Utilization, yield, and accuracy of the FilmArray Meningitis/Encephalitis panel with diagnostic stewardship and testing algorithm.
Broadhurst, M. J., Dujari, S., Budvytiene, I., Pinsky, B. A., Gold, C. A., & Banaei, N. (2020). Utilization, yield, and accuracy of the FilmArray Meningitis/Encephalitis panel with diagnostic stewardship and testing algorithm. Journal of Clinical Microbiology.

Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients.
Long, D. R., Gombar, S., Hogan, C. A., Greninger, A. L., Shah, V. O. R., Bryson-Cahn, C., … Sunshine, J. (2020). Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Persistent detection of SARS-CoV-2 RNA in patients and healthcare workers with COVID-19.
Gombar, S., Chang, M., Hogan, C. A., Zehnder, J., Boyd, S., Pinsky, B. A., & Shah, N. H. (2020). Persistent detection of SARS-CoV-2 RNA in patients and healthcare workers with COVID-19. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 129, 104477.

Assessment of Sensitivity and Specificity of Patient-Collected Lower Nasal Specimens for Sudden Acute Respiratory Syndrome Coronavirus 2 Testing.
Altamirano, J., Govindarajan, P., Blomkalns, A. L., Kushner, L. E., Stevens, B. A., Pinsky, B. A., & Maldonado, Y. (2020). Assessment of Sensitivity and Specificity of Patient-Collected Lower Nasal Specimens for Sudden Acute Respiratory Syndrome Coronavirus 2 Testing. JAMA Network Open, 3(6), e2012005.

Comparison of a laboratory-developed test targeting the envelope gene with three nucleic acid amplification tests for detection of SARS-CoV-2.
Bulterys, P. L., Garamani, N., Stevens, B., Sahoo, M. K., Huang, C. H., Hogan, C. A., … Pinsky, B. A. (2020). Comparison of a laboratory-developed test targeting the envelope gene with three nucleic acid amplification tests for detection of SARS-CoV-2. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 129, 104427.

A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.
Joshi, R. P., Pejaver, V., Hammarlund, N. E., Sung, H., Lee, S. K., Furmanchuk, A., … Banaei, N. (2020). A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 129, 104502.

Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening.
Kashyap, S., Gombar, S., Yadlowsky, S., Callahan, A., Fries, J., Pinsky, B. A., & Shah, N. H. (2020). Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening. Journal of the American Medical Informatics Association : JAMIA.

Evidence of transovarial transmission of Chikungunya and Dengue viruses in field-caught mosquitoes in Kenya.
Heath, C. J., Grossi-Soyster, E. N., Ndenga, B. A., Mutuku, F. M., Sahoo, M. K., Ngugi, H. N., … LaBeaud, A. D. (2020). Evidence of transovarial transmission of Chikungunya and Dengue viruses in field-caught mosquitoes in Kenya. PLoS Neglected Tropical Diseases, 14(6), e0008362.

SARS-CoV-2 RNAemia in a Healthy Blood Donor 40 Days After Respiratory Illness Resolution.
Pham, T. D., Huang, C. H., Wirz, O. F., Röltgen, K., Sahoo, M. K., Layon, A., … Pinsky, B. A. (2020). SARS-CoV-2 RNAemia in a Healthy Blood Donor 40 Days After Respiratory Illness Resolution. Annals of Internal Medicine.

B cell clonal expansion and convergent antibody responses to SARS-CoV-2.
Nielsen, S. C., Yang, F., Hoh, R. A., Jackson, K. J., Roeltgen, K., Lee, J.-Y. Y., … Boyd, S. D. (2020). B cell clonal expansion and convergent antibody responses to SARS-CoV-2. Research Square.

Knowledge, attitudes, and practices of cervical Cancer screening among HIV-positive and HIV-negative women participating in human papillomavirus screening in rural Zimbabwe.
Fitzpatrick, M., Pathipati, M. P., McCarty, K., Rosenthal, A., Katzenstein, D., Chirenje, Z. M., & Pinsky, B. (2020). Knowledge, attitudes, and practices of cervical Cancer screening among HIV-positive and HIV-negative women participating in human papillomavirus screening in rural Zimbabwe. BMC Women's Health, 20(1), 153.

Triplex Real-Time RT-PCR for Severe Acute Respiratory Syndrome Coronavirus 2
Waggoner, J. J., Stittleburg, V., Pond, R., Saklawi, Y., Sahoo, M. K., Babiker, A., … Rouphael, N. (2020). Triplex Real-Time RT-PCR for Severe Acute Respiratory Syndrome Coronavirus 2. EMERGING INFECTIOUS DISEASES, 26(7), 1633–35.

Comparison of a Point-of-Care Assay and a High-Complexity Assay for Detection of SARS-CoV-2 RNA.
Stevens, B., Hogan, C. A., Sahoo, M. K., Huang, C. H., Garamani, N., Zehnder, J., … Pinsky, B. A. (2020). Comparison of a Point-of-Care Assay and a High-Complexity Assay for Detection of SARS-CoV-2 RNA. The Journal of Applied Laboratory Medicine.

Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2.
Nielsen, S. C., Yang, F., Jackson, K. J., Hoh, R. A., Röltgen, K., Stevens, B., … Boyd, S. D. (2020). Human B cell clonal expansion and convergent antibody responses to SARS-CoV-2. BioRxiv : the Preprint Server for Biology.

Virological Failure and Acquired Genotypic Resistance Associated With Contemporary Antiretroviral Treatment Regimens.
Rhee, S.-Y. Y., Clutter, D., Hare, C. B., Tchakoute, C. T., Sainani, K., Fessel, W. J., … Shafer, R. W. (2020). Virological Failure and Acquired Genotypic Resistance Associated With Contemporary Antiretroviral Treatment Regimens. Open Forum Infectious Diseases, 7(9), ofaa316.

Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2.
Nielsen, S. C., Yang, F., Jackson, K. J., Hoh, R. A., Röltgen, K., Jean, G. H., … Boyd, S. D. (2020). Human B Cell Clonal Expansion and Convergent Antibody Responses to SARS-CoV-2. Cell Host & Microbe.

Carving out a niche for SARS-CoV-2 plasma RNA testing.
Pinsky, B. A., & Hogan, C. A. (2020). Carving out a niche for SARS-CoV-2 plasma RNA testing. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

A comprehensive analysis of RHOA mutation positive and negative angioimmunoblastic T-cell lymphomas by targeted deep sequencing, expression profiling and single cell digital image analysis.
Butzmann, A., Sridhar, K., Jangam, D., Kumar, J., Sahoo, M. K., Shahmarvand, N., … Ohgami, R. S. (2020). A comprehensive analysis of RHOA mutation positive and negative angioimmunoblastic T-cell lymphomas by targeted deep sequencing, expression profiling and single cell digital image analysis. International Journal of Molecular Medicine.

High Frequency of SARS-CoV-2 RNAemia and Association With Severe Disease.
Hogan, C. A., Stevens, B. A., Sahoo, M. K., Huang, C. H., Garamani, N., Gombar, S., … Pinsky, B. A. (2020). High Frequency of SARS-CoV-2 RNAemia and Association With Severe Disease. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Retrospective Screening for SARS-CoV-2 RNA in California, USA, Late 2019
Hogan, C. A., Garamani, N., Sahoo, M. K., Huang, C. H., Zehnder, J., & Pinsky, B. A. (2020). Retrospective Screening for SARS-CoV-2 RNA in California, USA, Late 2019. EMERGING INFECTIOUS DISEASES, 26(10), 2487–88.

Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response.
Murugesan, K., Jagannathan, P., Pham, T. D., Pandey, S., Bonilla, H. F., Jacobson, K., … Banaei, N. (2020). Interferon-gamma release assay for accurate detection of SARS-CoV-2 T cell response. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2.
Ramachandran, A., Huyke, D. A., Sharma, E., Sahoo, M. K., Huang, C. H., Banaei, N., … Santiago, J. G. (2020). Electric field-driven microfluidics for rapid CRISPR-based diagnostics and its application to detection of SARS-CoV-2. Proceedings of the National Academy of Sciences of the United States of America.

Proinflammatory IgG Fc structures in patients with severe COVID-19
Chakraborty, S., Gonzales, J., Edwards, K., Mallajosyulla, V., Buzzanco, A. S., Sherwood, R., … Tan, G. S. (2020). Proinflammatory IgG Fc structures in patients with severe COVID-19. Nature Immunology.

Large-Scale Testing of Asymptomatic Healthcare Personnel for Severe Acute Respiratory Syndrome Coronavirus 2.
Hogan, C. A., Gombar, S., Wang, H., Röltgen, K., Shi, R.-Z. Z., Holubar, M., … Pinsky, B. A. (2020). Large-Scale Testing of Asymptomatic Healthcare Personnel for Severe Acute Respiratory Syndrome Coronavirus 2. Emerging Infectious Diseases, 27(1).

Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome.
Röltgen, K., Powell, A. E., Wirz, O. F., Stevens, B. A., Hogan, C. A., Najeeb, J., … Boyd, S. D. (2020). Defining the features and duration of antibody responses to SARS-CoV-2 infection associated with disease severity and outcome. Science Immunology, 5(54).

SARS-CoV-2 Seroprevalence in Healthcare Personnel in Northern California Early in the COVID-19 Pandemic.
Rosser, J. I., Roltgen, K., Dymock, M., Shepard, J., Martin, A., Hogan, C. A., … Holubar, M. (2020). SARS-CoV-2 Seroprevalence in Healthcare Personnel in Northern California Early in the COVID-19 Pandemic. Infection Control and Hospital Epidemiology, 1–27.

Cost-Effectiveness of Nasopharyngeal Carcinoma Screening with Epstein-Barr Virus Polymerase Chain Reaction or Serology in High-Incidence Populations Worldwide.
Miller, J. A., Le, Q.-T., Pinsky, B. A., & Wang, H. (2020). Cost-Effectiveness of Nasopharyngeal Carcinoma Screening with Epstein-Barr Virus Polymerase Chain Reaction or Serology in High-Incidence Populations Worldwide. Journal of the National Cancer Institute.

High Dengue Burden and Circulation of 4 Virus Serotypes among Children with Undifferentiated Fever Kenya, 2014-2017
Shah, M. M., Ndenga, B. A., Mutuku, F. M., Vu, D. M., Grossi-Soyster, E. N., Okuta, V., … LaBeaud, A. D. (2020). High Dengue Burden and Circulation of 4 Virus Serotypes among Children with Undifferentiated Fever Kenya, 2014-2017. EMERGING INFECTIOUS DISEASES, 26(11), 2638–50.

Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients.
Long, D. R., Gombar, S., Hogan, C. A., Greninger, A. L., O'Reilly-Shah, V., Bryson-Cahn, C., … Sunshine, J. E. (2021). Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America, 72(2), 323–326.

Cutaneous cytomegalovirus - A case of disseminated cytomegalovirus presenting with extensive ulcerative skin lesions in a renal transplant recipient.
Ferguson, J., Mooney, K., Saleem, A., Stevens, B. A., Pinsky, B. A., Centkowski, S., … Ho, D. Y. (2021). Cutaneous cytomegalovirus - A case of disseminated cytomegalovirus presenting with extensive ulcerative skin lesions in a renal transplant recipient. Transplant Infectious Disease : an Official Journal of the Transplantation Society.

Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients.
Long, D. R., Gombar, S., Hogan, C. A., Greninger, A. L., O'Reilly-Shah, V., Bryson-Cahn, C., … Sunshine, J. E. (2021). Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America, 72(2), 323–26.

Performance of Nucleic Acid Amplification Tests for Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Prospectively Pooled Specimens
Wang, H., Hogan, C. A., Miller, J. A., Sahoo, M. K., Huang, C. H., Mfuh, K. O., … Pinsky, B. A. (2021). Performance of Nucleic Acid Amplification Tests for Detection of Severe Acute Respiratory Syndrome Coronavirus 2 in Prospectively Pooled Specimens. EMERGING INFECTIOUS DISEASES, 27(1), 92–103.

SARS-CoV-2 infection and COVID-19 severity in individuals with prior seasonal coronavirus infection.
Gombar, S., Bergquist, T., Pejaver, V., Hammarlund, N. E., Murugesan, K., Mooney, S., … Banaei, N. (2021). SARS-CoV-2 infection and COVID-19 severity in individuals with prior seasonal coronavirus infection. Diagnostic Microbiology and Infectious Disease, 100(2), 115338.

Comprehensive pathogen detection for ocular infections.
Doan, T., Sahoo, M. K., Ruder, K., Huang, C. H., Zhong, L., Chen, C., … Acharya, N. R. (2021). Comprehensive pathogen detection for ocular infections. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 136, 104759.

No Evidence of O'nyong-Nyong Viremia among Children with Febrile Illness in Kenya (2015-2018).
Shah, M. M., Ndenga, B. A., Mutuku, F. M., Okuta, V., Ronga, C. O., Chebii, P. K., … LaBeaud, A. D. (2021). No Evidence of O'nyong-Nyong Viremia among Children with Febrile Illness in Kenya (2015-2018). The American Journal of Tropical Medicine and Hygiene.

Evaluation of a measles virus multiplex, triple-target real-time RT-PCR in three specimen matrices at a U.S. academic medical center.
Broadhurst, M. J., Garamani, N., Hahn, Z., Jiang, B., Weber, J., Huang, C. H., … Pinsky, B. A. (2021). Evaluation of a measles virus multiplex, triple-target real-time RT-PCR in three specimen matrices at a U.S. academic medical center. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 136, 104757.

Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results.
Wang, H., Wiredja, D., Yang, L., Bulterys, P. L., Costales, C., Röltgen, K., … Pinsky, B. A. (2021). Case-Control Study of Individuals with Discrepant Nucleocapsid and Spike Protein SARS-CoV-2 IgG Results. Clinical Chemistry.

Combined SARS-CoV-2 nucleic acid amplification testing and respiratory virus panel RT-PCR on the Hologic Panther Fusion system.
Stevens, B. A., Hogan, C. A., Mfuh, K. O., Khan, G., Sahoo, M. K., Huang, C. H., … Pinsky, B. A. (2021). Combined SARS-CoV-2 nucleic acid amplification testing and respiratory virus panel RT-PCR on the Hologic Panther Fusion system. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 138, 104792.

Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial.
Jagannathan, P., Andrews, J. R., Bonilla, H., Hedlin, H., Jacobson, K. B., Balasubramanian, V., … Singh, U. (2021). Peginterferon Lambda-1a for treatment of outpatients with uncomplicated COVID-19: a randomized placebo-controlled trial. Nature Communications, 12(1), 1967.

Comparison of Anti-Dengue and Anti-Zika IgG on a Plasmonic Gold Platform with Neutralization Testing.
Rojas, A., Natrajan, M. S., Weber, J., Cardozo, F., Cantero, C., Ananta, J. S., … Waggoner, J. J. (2021). Comparison of Anti-Dengue and Anti-Zika IgG on a Plasmonic Gold Platform with Neutralization Testing. The American Journal of Tropical Medicine and Hygiene.

Ultra-sensitive Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antigen Detection for the Diagnosis of Coronavirus Disease 2019 (COVID-19) in Upper Respiratory Samples.
Wang, H., Hogan, C. A., Verghese, M., Solis, D., Sibai, M., Huang, C. H., … Pinsky, B. A. (2021). Ultra-sensitive Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Antigen Detection for the Diagnosis of Coronavirus Disease 2019 (COVID-19) in Upper Respiratory Samples. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

SARS-CoV-2 IgG Seropositivity and Acute Asymptomatic Infection Rate Among Firefighter First Responders in an Early Outbreak County in California.
Newberry, J. A., Gautreau, M., Staats, K., Carrillo, E., Mulkerin, W., Yang, S., … D'Souza, P. A. (2021). SARS-CoV-2 IgG Seropositivity and Acute Asymptomatic Infection Rate Among Firefighter First Responders in an Early Outbreak County in California. Prehospital Emergency Care : Official Journal of the National Association of EMS Physicians and the National Association of State EMS Directors, 1–10.

Strand Specific Reverse Transcription PCR for Detection of Replicating SARS-CoV-2
Hogan, C. A., Huang, C. H., Sahoo, M. K., Wang, H., Jiang, B., Sibai, M., … Pinsky, B. A. (2021). Strand Specific Reverse Transcription PCR for Detection of Replicating SARS-CoV-2. EMERGING INFECTIOUS DISEASES, 27(2), 632–35.

Comprehensive pathogen detection for ocular infections
Doan, T., Sahoo, M. K., Ruder, K., Huang, C. H., Zhong, L., Chen, C., … Acharya, N. R. (2021). Comprehensive pathogen detection for ocular infections. JOURNAL OF CLINICAL VIROLOGY, 136.

Comprehensive pathogen detection for ocular infections
Doan, T., Sahoo, M. K., Ruder, K., Huang, C. H., Zhong, L., Chen, C., … Acharya, N. R. (2021). Comprehensive pathogen detection for ocular infections. JOURNAL OF CLINICAL VIROLOGY, 136.

Plasma as an alternative COVID-19 diagnostic specimen in a hospitalized patient negative for SARS-CoV-2 by nasopharyngeal swab.
Lawrence, L., Stevens, B. A., Sahoo, M. K., Huang, C. H., Yamamoto, F., Röltgen, K., … Hogan, C. A. (2021). Plasma as an alternative COVID-19 diagnostic specimen in a hospitalized patient negative for SARS-CoV-2 by nasopharyngeal swab. Diagnostic Microbiology and Infectious Disease, 100(3), 115365.

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
Lau, B. T., Pavlichin, D., Hooker, A. C., Almeda, A., Shin, G., Chen, J., … Ji, H. P. (2021). Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies. Genome Medicine, 13(1), 62.

Comprehensive investigation of sources of misclassification errors in routine HIV testing in Zimbabwe.
Gregson, S., Moorhouse, L., Dadirai, T., Sheppard, H., Mayini, J., Beckmann, N., … Nyamukapa, C. (2021). Comprehensive investigation of sources of misclassification errors in routine HIV testing in Zimbabwe. Journal of the International AIDS Society, 24(4), e25700.

Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
Lau, B. T., Pavlichin, D., Hooker, A. C., Almeda, A., Shin, G., Chen, J., … Ji, H. P. (2020). Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies. MedRxiv : the Preprint Server for Health Sciences.

Increased viral variants in children and young adults with impaired humoral immunity and persistent SARS-CoV-2 infection: A consecutive case series.
Truong, T. T., Ryutov, A., Pandey, U., Yee, R., Goldberg, L., Bhojwani, D., … Dien Bard, J. (2021). Increased viral variants in children and young adults with impaired humoral immunity and persistent SARS-CoV-2 infection: A consecutive case series. EBioMedicine, 67, 103355.

Evaluation of SARS-CoV-2 total antibody detection via a lateral flow nanoparticle fluorescence immunoassay.
Sibai, M., Solis, D., Röltgen, K., Stevens, B. A., Mfuh, K. O., Sahoo, M. K., … Pinsky, B. A. (2021). Evaluation of SARS-CoV-2 total antibody detection via a lateral flow nanoparticle fluorescence immunoassay. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 139, 104818.

Identification of a SARS-CoV-2 Variant with L452R and E484Q Neutralization Resistance Mutations.
Verghese, M., Jiang, B., Iwai, N., Mar, M., Sahoo, M. K., Yamamoto, F., … Pinsky, B. A. (2021). Identification of a SARS-CoV-2 Variant with L452R and E484Q Neutralization Resistance Mutations. Journal of Clinical Microbiology.

Multiplex SARS-CoV-2 Genotyping RT-PCR for Population-Level Variant Screening and Epidemiologic Surveillance.
Wang, H., Miller, J. A., Verghese, M., Sibai, M., Solis, D., Mfuh, K. O., … Pinsky, B. A. (2021). Multiplex SARS-CoV-2 Genotyping RT-PCR for Population-Level Variant Screening and Epidemiologic Surveillance. Journal of Clinical Microbiology, JCM0085921.

Asthma phenotypes, associated comorbidities, and long-term symptoms in COVID-19.
Eggert, L. E., He, Z., Collins, W., Lee, A. S., Dhondalay, G., Jiang, S. Y., … Chinthrajah, R. S. (2021). Asthma phenotypes, associated comorbidities, and long-term symptoms in COVID-19. Allergy.

Association of Premature Immune Aging and Cytomegalovirus After Solid Organ Transplant
Higdon, L. E., Gustafson, C. E., Ji, X., Sahoo, M. K., Pinsky, B. A., Margulies, K. B., … Maltzman, J. S. (2021). Association of Premature Immune Aging and Cytomegalovirus After Solid Organ Transplant. FRONTIERS IN IMMUNOLOGY, 12.

Association of Premature Immune Aging and Cytomegalovirus After Solid Organ Transplant.
Higdon, L. E., Gustafson, C. E., Ji, X., Sahoo, M. K., Pinsky, B. A., Margulies, K. B., … Maltzman, J. S. (2021). Association of Premature Immune Aging and Cytomegalovirus After Solid Organ Transplant. Frontiers in Immunology, 12, 661551.

Post-vaccination SARS-CoV-2 infections and incidence of presumptive B.1.427/B.1.429 variant among healthcare personnel at a northern California academic medical center.
Jacobson, K. B., Pinsky, B. A., Montez Rath, M. E., Wang, H., Miller, J. A., Skhiri, M., … Holubar, M. (2021). Post-vaccination SARS-CoV-2 infections and incidence of presumptive B.1.427/B.1.429 variant among healthcare personnel at a northern California academic medical center. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Post-vaccination SARS-CoV-2 infections and incidence of the B.1.427/B.1.429 variant among healthcare personnel at a northern California academic medical center.
Jacobson, K. B., Pinsky, B. A., Rath, M. E., Wang, H., Miller, J. A., Skhiri, M., … Holubar, M. (2021). Post-vaccination SARS-CoV-2 infections and incidence of the B.1.427/B.1.429 variant among healthcare personnel at a northern California academic medical center. MedRxiv : the Preprint Server for Health Sciences.

Infection and Vaccine-Induced Neutralizing-Antibody Responses to the SARS-CoV-2 B.1.617 Variants.
Edara, V.-V., Pinsky, B. A., Suthar, M. S., Lai, L., Davis-Gardner, M. E., Floyd, K., … Fabrizio, T. P. (2021). Infection and Vaccine-Induced Neutralizing-Antibody Responses to the SARS-CoV-2 B.1.617 Variants. The New England Journal of Medicine.

Asthma phenotypes, associated comorbidities, and long-term symptoms in COVID-19
Eggert, L. E., He, Z., Collins, W., Lee, A. S., Nadeau, K., & Chinthrajah, R. S. (2021). Asthma phenotypes, associated comorbidities, and long-term symptoms in COVID-19. European Journal of Allergy and Clinical Immunology.

Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial.
Oldenburg, C. E., Pinsky, B. A., Brogdon, J., Chen, C., Ruder, K., Zhong, L., … Doan, T. (2021). Effect of Oral Azithromycin vs Placebo on COVID-19 Symptoms in Outpatients With SARS-CoV-2 Infection: A Randomized Clinical Trial. JAMA.

Mapping of SARS-CoV-2 Brain Invasion in COVID-19 Disease
Serrano, G., Walkera, J., Arce, R., Glass, M., Vargas, D., Sue, L., … Beach, T. (2021). Mapping of SARS-CoV-2 Brain Invasion in COVID-19 Disease. JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY. OXFORD UNIV PRESS INC.

Brain Histopathology in Subjects with COVID-19 Disease
Beach, T., Dickson, D., Deture, M., Walker, J., Arce, R., Glass, M., … Serrano, G. (2021). Brain Histopathology in Subjects with COVID-19 Disease. JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY. OXFORD UNIV PRESS INC.

SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA.
Hoffman, S. A., Costales, C., Sahoo, M. K., Palanisamy, S., Yamamoto, F., Huang, C. H., … Pinsky, B. A. (2021). SARS-CoV-2 Neutralization Resistance Mutations in Patient with HIV/AIDS, California, USA. Emerging Infectious Diseases, 27(10).

The truth about SARS-CoV-2 cycle threshold values is rarely pure and never simple.
Rhoads, D. D., & Pinsky, B. A. (2021). The truth about SARS-CoV-2 cycle threshold values is rarely pure and never simple. Clinical Chemistry.

Nasopharyngeal metabolomics and machine learning approach for the diagnosis of influenza.
Hogan, C. A., Rajpurkar, P., Sowrirajan, H., Phillips, N. A., Le, A. T., Wu, M., … Pinsky, B. A. (2021). Nasopharyngeal metabolomics and machine learning approach for the diagnosis of influenza. EBioMedicine, 71, 103546.

Case-control study evaluating risk factors for SARS-CoV-2 outbreak amongst healthcare personnel at a tertiary care center.
Rosser, J. I., Tayyar, R., Giardina, R., Kolonoski, P., Kenski, D., Shen, P., … Holubar, M. (2021). Case-control study evaluating risk factors for SARS-CoV-2 outbreak amongst healthcare personnel at a tertiary care center. American Journal of Infection Control.

Diagnosis of Dengue in a returning traveler from Pakistan suspected of COVID-19, California, USA.
Bulterys, P. L., Solis, D., Verghese, M., Huang, C., Sibai, M., Costales, C., … Pinsky, B. A. (2021). Diagnosis of Dengue in a returning traveler from Pakistan suspected of COVID-19, California, USA. Diagnostic Microbiology and Infectious Disease, 101(4), 115517.

Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.
Natarajan, A., Han, A., Zlitni, S., Brooks, E. F., Vance, S. E., Wolfe, M., … Bhatt, A. S. (2021). Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications, 12(1), 5753.

SARS-CoV-2 Nucleocapsid Plasma Antigen for Diagnosis and Monitoring of COVID-19.
Wang, H., Hogan, C. A., Verghese, M., Solis, D., Sibai, M., Huang, C. H., … Pinsky, B. A. (2021). SARS-CoV-2 Nucleocapsid Plasma Antigen for Diagnosis and Monitoring of COVID-19. Clinical Chemistry.

Use of Outpatient-Derived COVID-19 Convalescent Plasma in COVID-19 Patients Before Seroconversion.
Wirz, O. F., Roltgen, K., Stevens, B. A., Pandey, S., Sahoo, M. K., Tolentino, L., … Boyd, S. D. (2021). Use of Outpatient-Derived COVID-19 Convalescent Plasma in COVID-19 Patients Before Seroconversion. Frontiers in Immunology, 12, 739037.

Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.
Natarajan, A., Han, A., Zlitni, S., Brooks, E. F., Vance, S. E., Wolfe, M., … Bhatt, A. S. (2021). Standardized and optimized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. MedRxiv : the Preprint Server for Health Sciences.

The Effect of Povidone-Iodine Nasal Spray on COVID-19 Nasopharyngeal Viral Load in Patients: A Randomized Control Trial.
Zarabanda, D., Vukkadala, N., Phillips, K. M., Qian, Z. J., Mfuh, K. O., Hatter, M., … Nayak, J. V. (2021). The Effect of Povidone-Iodine Nasal Spray on COVID-19 Nasopharyngeal Viral Load in Patients: A Randomized Control Trial. The Laryngoscope.

Performance evaluation and optimized reporting workflow for HIV diagnostic screening and confirmatory tests in a low prevalence setting.
Wiredja, D., Ritchie, T. A., Tam, G., Hogan, C. A., Pinsky, B., & Shi, R. Z. (2021). Performance evaluation and optimized reporting workflow for HIV diagnostic screening and confirmatory tests in a low prevalence setting. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 145, 105020.

Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA.
Natarajan, A., Han, A., Zlitni, S., Brooks, E. F., Vance, S. E., Wolfe, M., … Bhatt, A. S. (2021). Publisher Correction: Standardized preservation, extraction and quantification techniques for detection of fecal SARS-CoV-2 RNA. Nature Communications, 12(1), 7100.

Direct comparison of antibody responses to four SARS-CoV-2 vaccines in Mongolia.
Dashdorj, N. J., Wirz, O. F., Roltgen, K., Haraguchi, E., Buzzanco, A. S., Sibai, M., … Dashdorj, N. D. (2021). Direct comparison of antibody responses to four SARS-CoV-2 vaccines in Mongolia. Cell Host & Microbe.

Immunogenicity and Tolerability of COVID-19 mRNA Vaccines in PID patients with functional B-cell defects.
Pham, M. N., Murugesan, K., Banaei, N., Pinsky, B. A., Tang, M., Hoyte, E., … Gernez, Y. (1800). Immunogenicity and Tolerability of COVID-19 mRNA Vaccines in PID patients with functional B-cell defects. The Journal of Allergy and Clinical Immunology.

Long Term Accuracy of SARS-CoV-2 Interferon-? Release Assay and its Application in Household Investigation.
Murugesan, K., Jagannathan, P., Altamirano, J., Maldonado, Y. A., Bonilla, H. F., Jacobson, K. B., … Banaei, N. (2022). Long Term Accuracy of SARS-CoV-2 Interferon-? Release Assay and its Application in Household Investigation. Clinical Infectious Diseases : an Official Publication of the Infectious Diseases Society of America.

Mutations in JAK/STAT and NOTCH1 Genes Are Enriched in Post-Transplant Lymphoproliferative Disorders.
Butzmann, A., Sridhar, K., Jangam, D., Song, H., Singh, A., Kumar, J., … Ohgami, R. S. (1800). Mutations in JAK/STAT and NOTCH1 Genes Are Enriched in Post-Transplant Lymphoproliferative Disorders. Frontiers in Oncology, 11, 790481.

Immune imprinting, breadth of variant recognition, and germinal center response in human SARS-CoV-2 infection and vaccination.
Röltgen, K., Nielsen, S. C., Silva, O., Younes, S. F., Zaslavsky, M., Costales, C., … Boyd, S. D. (2022). Immune imprinting, breadth of variant recognition, and germinal center response in human SARS-CoV-2 infection and vaccination. Cell.

Development and evaluation of an RT-qPCR for the identification of the SARS-CoV-2 Omicron variant.
Sibai, M., Wang, H., Yeung, P. S.-W., Sahoo, M. K., Solis, D., Mfuh, K. O., … Pinsky, B. A. (2022). Development and evaluation of an RT-qPCR for the identification of the SARS-CoV-2 Omicron variant. Journal of Clinical Virology : the Official Publication of the Pan American Society for Clinical Virology, 148, 105101.

Feasibility of Specimen Self-collection in Young Children Undergoing SARS-CoV-2 Surveillance for In-Person Learning.
Altamirano, J., Lopez, M., Robinson, I. G., Chun, L. X., Tam, G. K.-Y., Shaikh, N. J., … Maldonado, Y. (2022). Feasibility of Specimen Self-collection in Young Children Undergoing SARS-CoV-2 Surveillance for In-Person Learning. JAMA Network Open, 5(2), e2148988.

Immunogenicity of a Third COVID-19 mRNA Vaccine Dose in PID Patients with Functional B-cell Defects.
Gernez, Y., Murugesan, K., Cortales, C. R., Banaei, N., Hoyte, L., Pinsky, B. A., … Pham, M. (2022). Immunogenicity of a Third COVID-19 mRNA Vaccine Dose in PID Patients with Functional B-cell Defects. The Journal of Allergy and Clinical Immunology. In Practice.

Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients.
Long, D. R., Gombar, S., Hogan, C. A., Greninger, A. L., OReilly Shah, V., Bryson-Cahn, C., … Sunshine, J. (2020). Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients. MedRxiv : the Preprint Server for Health Sciences.

Novel Utilization of Strand-Specific Reverse Transcription Polymerase Chain Reaction in Perioperative Clinical Decision Making for SARS-CoV-2 Polymerase Chain Reaction Positive Patients.
Jette, C. G., Wang, T., Wang, E., Man, J. Y., Mireles, S., Maass, B., … D'Souza, G. (2022). Novel Utilization of Strand-Specific Reverse Transcription Polymerase Chain Reaction in Perioperative Clinical Decision Making for SARS-CoV-2 Polymerase Chain Reaction Positive Patients. Paediatric Anaesthesia.

An 8-gene machine learning model improves clinical prediction of severe dengue progression.
Liu, Y. E., Saul, S., Rao, A. M., Robinson, M. L., Agudelo Rojas, O. L., Sanz, A. M., … Khatri, P. (2022). An 8-gene machine learning model improves clinical prediction of severe dengue progression. Genome Medicine, 14(1), 33.

SARS-CoV-2 Neutralizing Monoclonal Antibodies for the Treatment of COVID-19 in Kidney Transplant Recipients.
Wang, A. X., Busque, S., Kuo, J., Singh, U., Roeltgen, K., Pinsky, B. A., … Lenihan, C. R. (2022). SARS-CoV-2 Neutralizing Monoclonal Antibodies for the Treatment of COVID-19 in Kidney Transplant Recipients. Kidney360, 3(1), 133–143.

Detailed characterization of hospitalized patients infected with the Omicron variant of SARS-CoV-2.
Ozdalga, E., Ahuja, N., Sehgal, N., Hom, J., Weng, Y., Pinsky, B., … Collins, W. (2022). Detailed characterization of hospitalized patients infected with the Omicron variant of SARS-CoV-2. Journal of Internal Medicine.

Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification.
Yeung, P. S.-W., Wang, H., Sibai, M., Solis, D., Yamamoto, F., Iwai, N., … Pinsky, B. A. (2022). Evaluation of a Rapid and Accessible Reverse Transcription-Quantitative PCR Approach for SARS-CoV-2 Variant of Concern Identification. Journal of Clinical Microbiology, e0017822.

Vaccine-Associated Measles Encephalitis in Immunocompromised Child, California, USA.
Costales, C., Sahoo, M. K., Huang, C. H., Guimaraes, C. V., Born, D., Kushner, L., … Pinsky, B. A. (2022). Vaccine-Associated Measles Encephalitis in Immunocompromised Child, California, USA. Emerging Infectious Diseases, 28(4), 906–908.

Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic.
Huang, C. H., Sahoo, M. K., Verghese, M., Sibai, M., Solis, D., Mfuh, K. O., … Pinsky, B. A. (2022). Interepidemic Respiratory Syncytial Virus during the COVID-19 Pandemic. Microbiology Spectrum, e0094722.

A Spurious Positive Result on the Abbott Architect 4th generation HIV Ag/Ab Combo Assay in a Low-Risk Patient.
Pepper, M. A., Wiredja, D. D., Patel, P. M., Stevens, B. A., Pinsky, B. A., & Shi, R.-Z. Z. (2022). A Spurious Positive Result on the Abbott Architect 4th generation HIV Ag/Ab Combo Assay in a Low-Risk Patient. Clinica Chimica Acta; International Journal of Clinical Chemistry.

Broad-spectrum CRISPR-mediated inhibition of SARS-CoV-2 variants and endemic coronaviruses in vitro.
Zeng, L., Liu, Y., Nguyenla, X. H., Abbott, T. R., Han, M., Zhu, Y., … Qi, L. S. (2022). Broad-spectrum CRISPR-mediated inhibition of SARS-CoV-2 variants and endemic coronaviruses in vitro. Nature Communications, 13(1), 2766.